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Nocardia farcinica IFM 10152 (nfar0)
Gene : gabD
DDBJ      :gabD         putative succinate-semialdehyde dehydrogenase
Swiss-Prot:             

Homologs  Archaea  56/68 : Bacteria  798/915 : Eukaryota  190/199 : Viruses  0/175   --->[See Alignment]
c.82.1
:487 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->484 3ifgA PDBj e-117 48.5 %
:RPS:PDB   13->487 3ek1G PDBj e-104 43.6 %
:RPS:SCOP  13->484 1uzbA  c.82.1.1 * 6e-98 27.8 %
:HMM:SCOP  11->485 1uzbA_ c.82.1.1 * 1.5e-166 48.4 %
:RPS:PFM   38->469 PF00171 * Aldedh 8e-70 43.8 %
:HMM:PFM   22->480 PF00171 * Aldedh 3.8e-166 45.6 456/462  
:BLT:SWISS 15->484 GABD_ECOLI e-112 44.1 %
:PROS 258->265|PS00687|ALDEHYDE_DEHYDR_GLU
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57620.1 GT:GENE gabD GT:PRODUCT putative succinate-semialdehyde dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2941610..2943073) GB:FROM 2941610 GB:TO 2943073 GB:DIRECTION - GB:GENE gabD GB:PRODUCT putative succinate-semialdehyde dehydrogenase GB:PROTEIN_ID BAD57620.1 LENGTH 487 SQ:AASEQ MTDREGALLATAPHQLFIGGEWVDATGGATFAVHDPATGEIVREVADATAEDAVRALDAAVAAQESWAATAPRTRGEILRRAWELVQERAEDLALLMTLEMGKPLAEARGEVTYGGEFLRWFSEEAVRIHGRYGLNPEGTGQMIVSQRPVGPCYFITPWNFPFAMATRKIAPALAAGCTVVVKPPQLTPLTTLFFTGLLAEAGLPAGVVNVVTSTSSRRVSAPIIADSRLRKLSFTGSTEVGRQLIAQAADNVLRVSMELGGNAPFVVFEDADLDKAVEGALAAKFRNIGQACTAANRFIVHEQVAEEFAARVTERVAAMKIGRGTEDGVTIGPLIDDDAVAKAHELVTDATARGAVVRTGGERIDGPGSFYRPTVLTGVTEGSAILREEIFGPVLAIATFTTEDEAVRLANNTEYGLVSYVYTRDLARGHRMIDKLETGMMGLNAGVVSNAAAPFGGVKQSGVGREGGFEGIHEFLSTKYTLIPTS GT:EXON 1|1-487:0| BL:SWS:NREP 1 BL:SWS:REP 15->484|GABD_ECOLI|e-112|44.1|469/482| PROS 258->265|PS00687|ALDEHYDE_DEHYDR_GLU|PDOC00068| SEG 48->63|ataedavraldaavaa| SEG 179->199|tvvvkppqltplttlfftgll| SEG 208->221|vvnvvtstssrrvs| BL:PDB:NREP 1 BL:PDB:REP 14->484|3ifgA|e-117|48.5|470/482| RP:PDB:NREP 1 RP:PDB:REP 13->487|3ek1G|e-104|43.6|472/482| RP:PFM:NREP 1 RP:PFM:REP 38->469|PF00171|8e-70|43.8|429/440|Aldedh| HM:PFM:NREP 1 HM:PFM:REP 22->480|PF00171|3.8e-166|45.6|456/462|Aldedh| GO:PFM:NREP 3 GO:PFM GO:0008152|"GO:metabolic process"|PF00171|IPR015590| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00171|IPR015590| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00171|IPR015590| RP:SCP:NREP 1 RP:SCP:REP 13->484|1uzbA|6e-98|27.8|467/516|c.82.1.1| HM:SCP:REP 11->485|1uzbA_|1.5e-166|48.4|471/516|c.82.1.1|1/1|ALDH-like| OP:NHOMO 9930 OP:NHOMOORG 1044 OP:PATTERN 221-1-4754454653-312111-A4432-521-11111111211222124431-1--1-13351--1 6994M94799C547JQMAB-AO22JcAAAAAFSQWSMV**8N7V67781744VHNDA8--CEP3CDNLKKA----111-122H11111--11-211---52637484656--------------12222221221276676---64455334313111113122324555411111111111166745-1-C89999998AAAA99887EDAA6B9AB9HFDF86222221D54555555555555558667711112311111121122-11122---2222111-221111111111122212222222221--111---2-11162223223221-211-2222113131---2211---1--1---1118-5HDDA11111B6GBK44699796FGHJFDHCHGH-45D43I6ANOB-NJJLLLVRNXQRE99C5AGQCAAC8IIEDEEEEEEADC5456811111111----1111-1111-11-11118APbB2BOKDDdYaaYbRKKKGaZbePPNMBNuVuMaTK14GCFC9CA8GDMCKP333-112A62444444132AC654413331332223-3333435443333BB15211322211211111111112-11143981894K7DB89AAAA9AB888987AB9AD-1-5421------A967587B998B878BC-9CAC988C7B98ABBABB9HIH99894A98998999A77A797I773667621467688758888--1633122888817DKV222112-----2223JILFH7G7C9H1KKKKKONUGRRNNCKHJ3211132122433A566668B88B8999997555------11441111--------2-2----1---1--2-111-12--111111112-2-2-331 ----CB9-A53-9B7IJLKQNQKTVRSEECCCCEEDEFDEEEEBDDDDKUUd*nNMFCCDDDD9B69A4B88D9A883888999AC57-KTEJCFEDBC9A8GFCF-9NBaPiIMONBCDBELGQQ9XCr*Q-RPUDED9RFFNEAGDDCI99bDFDFNKcXCOFB8KBDFAJNC5765*55559JGcVLHl78UGMME ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 487 STR:RPRED 100.0 SQ:SECSTR ETTEEHHHHcEEcccEEETTEEEccTTccEEEEEcTTTccEEEEEEcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHGGGcccEEEccccTTEEEEEEEEEccEEEEEcccccTTHHHHHHHHHHHHTTcEEEEEccTTcHHHHHHHHHHHHHTTccTTTEEEccccHHHHHHHHHHHcTTEEEEEEEccHHHHHHHHHHHGGGTcEEEEEccccEEEEEcTTccHHHHHHHHHHHHHGGGGccTTcEEEEEEEGGGHHHHHHHHHHHHHTcccccTTcTTccccccccHHHHHHHHHHHHHHHHTTcEEEEcccEEEEETTEEccEEEEEEcTTcGGGTccccccEEEEEEEccHHHHHHHHTccccccEEEEEcccHHHHHHHHHHccccEEEEcccccccccccccccGGGEEccccGGGcGGGGEEEEEEEEEcc DISOP:02AL 1-6| PSIPRED cccccccHHHHHHHHHccccEEEccccccEEEEEccccccEEEEEccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccccEEEEEEEcccEEEEEccHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHccccEEEEEEcccccEEEcccccHHHHHHHHHHHHHHccccEEEcccEEEEEccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEccEEEcccccEEccEEEccccccccEEEEcccccEEEEEEcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccHHHHHHHHHHHEEEEEEEcc //