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Nocardia farcinica IFM 10152 (nfar0)
Gene : glgB
DDBJ      :glgB         putative 1,4-alpha-glucan branching enzyme
Swiss-Prot:GLGB_NOCFA   RecName: Full=1,4-alpha-glucan-branching enzyme;         EC=2.4.1.18;AltName: Full=Glycogen-branching enzyme;         Short=BE;AltName: Full=1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase;

Homologs  Archaea  12/68 : Bacteria  571/915 : Eukaryota  167/199 : Viruses  0/175   --->[See Alignment]
b.1.18b.71.1c.1.8
:744 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   39->121 2bhuA PDBj 3e-06 37.6 %
:BLT:PDB   136->739 1m7xB PDBj e-169 51.0 %
:RPS:PDB   39->113 2bhzA PDBj 7e-05 29.9 %
:RPS:PDB   130->739 1bvzA PDBj 3e-72 16.7 %
:RPS:SCOP  39->100 2bhuA1  b.1.18.2 * 3e-05 37.5 %
:RPS:SCOP  136->246 1m7xA1  b.1.18.2 * 8e-27 43.0 %
:RPS:SCOP  254->636 1m7xA3  c.1.8.1 * 2e-64 53.8 %
:RPS:SCOP  639->740 1m7xA2  b.71.1.1 * 3e-25 33.3 %
:HMM:SCOP  36->131 2bhuA1 b.1.18.2 * 4.4e-18 39.6 %
:HMM:SCOP  188->632 1gjwA2 c.1.8.1 * 3e-114 39.0 %
:HMM:SCOP  639->744 1m7xA2 b.71.1.1 * 1.8e-36 50.9 %
:RPS:PFM   35->110 PF06871 * TraH_2 3e-04 35.6 %
:RPS:PFM   159->219 PF02922 * CBM_48 4e-13 55.7 %
:RPS:PFM   288->425 PF00128 * Alpha-amylase 3e-09 37.8 %
:RPS:PFM   647->699 PF02806 * Alpha-amylase_C 3e-08 52.8 %
:HMM:PFM   47->115 PF02922 * CBM_48 0.0001 29.0 69/84  
:HMM:PFM   143->229 PF02922 * CBM_48 7.4e-25 45.7 81/84  
:HMM:PFM   644->740 PF02806 * Alpha-amylase_C 3.5e-24 44.2 86/93  
:HMM:PFM   293->362 PF00128 * Alpha-amylase 1.2e-12 34.8 69/316  
:HMM:PFM   395->481 PF00128 * Alpha-amylase 6.3e-06 25.4 63/316  
:BLT:SWISS 1->744 GLGB_NOCFA 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55923.1 GT:GENE glgB GT:PRODUCT putative 1,4-alpha-glucan branching enzyme GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1191399..1193633) GB:FROM 1191399 GB:TO 1193633 GB:DIRECTION - GB:GENE glgB GB:PRODUCT putative 1,4-alpha-glucan branching enzyme GB:PROTEIN_ID BAD55923.1 LENGTH 744 SQ:AASEQ MSGPEDPADRRHGEVPAPRRDIPRPLVERRDLMLLAAGTHRDPHTVLGAHPHPDGTVVRVLRPHAAKVSVRVGGVDHPLDSVGYGVFAAVLPHPELMDYRIVTEYPGGPTVIAADGFRFLPTLGELDLHLIGEGRHEHLWHVLGAHPRRYTTLDGPVSGTSFAVWAPNARGVTVIGDFDGWSGNTAPMRALGTSGVWEVFVPDVGSGTKYKYRVHGADGRVVDHADPLAFATELPPATASVVTGSDYTWQDAQWLERRRSTDPTRSPMSVYEVHLGSWRPGLGYRELAEQLADYVRAAGYTHVELLPVAEHPFGGSWGYQVTSYYAPTARFGSPDDFRAFVDHLHGAGIGVLLDWVPAHFPRDEWALARFDGTPLYEHPDPRRGEQLDWGTYVFDFGRNEVRNFLVANARFWIEEFHIDGLRVDAVASMLYLDYSRGENWEPNIHGGRENLEAVAFLRELNDVVHRAHPGVVTIAEESTTWPGVTRGTEVGGLGFTMKWNMGWMHDTLGFLARDPIHRSWHHNEITFSLVYAWSENYVLPISHDEVVHGKGTLWTRMPGDDFAKAAGVRALLAYMWAHPGKQLLFMGQDFGQFREWSHDRGLDWGELDNPLHRGIATAVRDLNRVYRATPALWSQDTTPGGYAWIEADDRDRNVLAFLRYGSDGSTVACVFNFSGALHGEYRVGLPIAGEWTEILNTDAADYGGSGVGNYGVVRTEEIPWHGRPVSATVALAPNSAVWLAAPRA GT:EXON 1|1-744:0| SW:ID GLGB_NOCFA SW:DE RecName: Full=1,4-alpha-glucan-branching enzyme; EC=2.4.1.18;AltName: Full=Glycogen-branching enzyme; Short=BE;AltName: Full=1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; SW:GN Name=glgB; OrderedLocusNames=NFA_10780; SW:KW Complete proteome; Glycogen biosynthesis; Glycosyltransferase;Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->744|GLGB_NOCFA|0.0|100.0|744/744| GO:SWS:NREP 3 GO:SWS GO:0005978|"GO:glycogen biosynthetic process"|Glycogen biosynthesis| GO:SWS GO:0016757|"GO:transferase activity, transferring glycosyl groups"|Glycosyltransferase| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| SEG 702->713|yggsgvgnygvv| BL:PDB:NREP 2 BL:PDB:REP 39->121|2bhuA|3e-06|37.6|79/580| BL:PDB:REP 136->739|1m7xB|e-169|51.0|577/591| RP:PDB:NREP 2 RP:PDB:REP 39->113|2bhzA|7e-05|29.9|74/581| RP:PDB:REP 130->739|1bvzA|3e-72|16.7|556/585| RP:PFM:NREP 4 RP:PFM:REP 35->110|PF06871|3e-04|35.6|73/206|TraH_2| RP:PFM:REP 159->219|PF02922|4e-13|55.7|61/82|CBM_48| RP:PFM:REP 288->425|PF00128|3e-09|37.8|135/296|Alpha-amylase| RP:PFM:REP 647->699|PF02806|3e-08|52.8|53/95|Alpha-amylase_C| HM:PFM:NREP 5 HM:PFM:REP 47->115|PF02922|0.0001|29.0|69/84|CBM_48| HM:PFM:REP 143->229|PF02922|7.4e-25|45.7|81/84|CBM_48| HM:PFM:REP 644->740|PF02806|3.5e-24|44.2|86/93|Alpha-amylase_C| HM:PFM:REP 293->362|PF00128|1.2e-12|34.8|69/316|Alpha-amylase| HM:PFM:REP 395->481|PF00128|6.3e-06|25.4|63/316|Alpha-amylase| GO:PFM:NREP 8 GO:PFM GO:0004553|"GO:hydrolase activity, hydrolyzing O-glycosyl compounds"|PF02922|IPR004193| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF02922|IPR004193| GO:PFM GO:0003824|"GO:catalytic activity"|PF00128|IPR006047| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00128|IPR006047| GO:PFM GO:0043169|"GO:cation binding"|PF00128|IPR006047| GO:PFM GO:0003824|"GO:catalytic activity"|PF02806|IPR006048| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF02806|IPR006048| GO:PFM GO:0043169|"GO:cation binding"|PF02806|IPR006048| RP:SCP:NREP 4 RP:SCP:REP 39->100|2bhuA1|3e-05|37.5|62/97|b.1.18.2| RP:SCP:REP 136->246|1m7xA1|8e-27|43.0|107/110|b.1.18.2| RP:SCP:REP 254->636|1m7xA3|2e-64|53.8|359/371|c.1.8.1| RP:SCP:REP 639->740|1m7xA2|3e-25|33.3|102/106|b.71.1.1| HM:SCP:REP 36->131|2bhuA1|4.4e-18|39.6|91/0|b.1.18.2|1/2|E set domains| HM:SCP:REP 188->632|1gjwA2|3e-114|39.0|385/572|c.1.8.1|1/1|(Trans)glycosidases| HM:SCP:REP 639->744|1m7xA2|1.8e-36|50.9|106/106|b.71.1.1|1/1|Glycosyl hydrolase domain| OP:NHOMO 1494 OP:NHOMOORG 750 OP:PATTERN -------222222222------------------------------1----1---------1------ 124-211222222-22322-22--3222222222222222433422311331222332----212--432121221111--1311---33311311---312-1221651111111122222221-----------3331----111563552222211211112133352111111111111222------2-111111111111111-111-2111112-1-1-------21--------------------1--11-----11--11-1-----1111111-111122222222222-------------234---333111--1-------2-11111-212--131-22--11111-12-1---1-1-113----------223333232324------------34534433412-1224432433223-2-1-2236331--22222222133-4143-------------------------------1----3322333133324443323333322332222---2221-3---1-23---32212---------122231-111-212122111-423-11--223334515-----------------------1122322311--4-222222-1-222212-12-----2112------13111112222222222-222222222222222222111121---443444444444444312222222--111111111111-------------1---1111332-22121222----------31333333222333333331111111111-11111111111113-55555555------2-----------------1----------------1---------11--2-212261 --12112----111311-1111111111111111111111111111-1111111111-1111111111-1111-111-11111111---12111111112111112-11-21412221-1-11111-1-381-11111111-111111112-11111116DF12111112-12112443x332226453133------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 709 STR:RPRED 95.3 SQ:SECSTR #################################ccGGGTcTTGGGEEccccEEEEEccEEEEEETTEEEEEEEGGGTTTccEEccEEEEETTEEEEEEEEEEEEEEEEcccEEEEEEEccccccTTcccccGGGccccccTTTEEEEETHHHHcGGGTEEEEEEEEETTcccEEEEcTTccTTcccEEEEEEcEEEEEEEEEcTTccEEEEEEEEcccccEEEEETTEEEccHHHHccEEEccccTTcccccGGGGGccEccTTcccTTcccccTTccccccccHHHHHHHHHHHHHHTccEEEEcccccccccccccccccccccccTTTccHHHHHHHHHHHHTTTccEEEEEcTTcccTTcHHHHHHHHHGGGcTTGGGcccccccccccccccccccccccTTcccccTTcHHHHHHHHHHHHHHHHHTcccHHHHcTEEEETTGGGccHHHHHHHHHHHHHHcTTcEEEEccccccTTTTTTTGGTcccccEEEEHHHHHHHHHHHTTccccHHHHHHHHHHHHHTTccHHHHTTcEEEcccTTcccHHHHTTTcHEEccHHHHHHHHHHTTcccEEEEETTGGGTcccccTTTTcccccccGGGccHHHHHHHHHHHHHHHHcTHHHHcEHHHTTcEEEEEEETTTTEEEEEEHEETTEEEEEEEEccccEEEEEEcccccccccEEccccccEEEcccccccccEEccccccccEETTEEEEEEcTTcEEEEEEE## DISOP:02AL 1-20| PSIPRED ccccccccccccccccccHHHcccccccHHHHHHHHHcccccccEEEccccccccEEEEEEcccccEEEEEEcccEEEEccccccEEEEEEcccccccEEEEEEcccccEEEEEccEEccccccccHHEEEccccccHHHHHcccEEccccccccccccEEEEEEcccccEEEEEEEcccccccEEEEEEcccccEEEEEEEEcccccEEEEEEEcccccEEEcccccEEEEEcccccEEEEccccccccccHHHccccccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEEcccccccccccHHHccccccEEEccHHHHHHHHHHHcccccccccccccHHHHHHccHHcEEccccccEEEccccEEccccccHHHHHHHHHHHHHHHHHHccccEEEEEccHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHcccccccEEEEEEEcccccEEEEEEEcccccEEEEEEEccccccccEEEEcccccEEEEEEEcccHHHccccccccccEEEccccccccccEEEEEEccEEEEEEEcccc //