[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : gltD
DDBJ      :gltD         putative glutamate synthase small subunit
Swiss-Prot:             

Homologs  Archaea  25/68 : Bacteria  644/915 : Eukaryota  181/199 : Viruses  0/175   --->[See Alignment]
a.1.2c.3.1c.4.1
:489 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->455 2vdcG PDBj 7e-67 38.3 %
:RPS:PDB   37->349 2dw4A PDBj 2e-53 17.4 %
:RPS:PDB   348->455 2a0iA PDBj 2e-06 10.9 %
:RPS:SCOP  6->127 1nekB1  a.1.2.1 * 4e-15 14.5 %
:RPS:SCOP  144->341 1gt8A4  c.4.1.1 * 4e-38 26.6 %
:RPS:SCOP  348->446 1d5tA1  c.3.1.3 * 7e-08 15.2 %
:HMM:SCOP  10->156 1h7wA1 a.1.2.2 * 1.6e-38 38.6 %
:HMM:SCOP  144->405 1lqtA2 c.4.1.1 * 1.8e-74 52.6 %
:HMM:SCOP  365->471 1djnA3 c.4.1.1 * 2.5e-11 36.6 %
:RPS:PFM   148->449 PF07992 * Pyr_redox_2 6e-16 39.1 %
:HMM:PFM   147->450 PF07992 * Pyr_redox_2 3.9e-37 34.6 185/202  
:BLT:SWISS 5->474 GLSN_MEDSA e-118 52.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54939.1 GT:GENE gltD GT:PRODUCT putative glutamate synthase small subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 89216..90685 GB:FROM 89216 GB:TO 90685 GB:DIRECTION + GB:GENE gltD GB:PRODUCT putative glutamate synthase small subunit GB:PROTEIN_ID BAD54939.1 LENGTH 489 SQ:AASEQ MADPQGFLKHTKRELPDRRPVPLRLMDWKEVYEENFSHQTLQTQASRCMDCGIPFCHNGCPLGNLIPEWNDLVYRDRWREAIDRLHATNNFPEFTGRLCPAPCEASCVLGINQDPVTIKQVEVEIIENAFDEGWVAPVYPTRLTGKKVAVVGSGPAGLAAAQQLTRAGHTVTVFERADRIGGLLRYGIPEFKMEKRFIDRRLAQMEAEGTIFKTGVNVGVDITADELREQYDAIVLAGGATQARDLPIPGRELDGIHQAMEFLPWANRVQLGDPVTDADGLPPIHAKGKKVVIIGGGDTGADCLGTSHRQGAASVHQFEIMPRPPAERAASTPWPTYPLMYRVSSAHEEGGERVFSVNTERFVGKDGKVTGLEAHEVKMVNGRFEKVEGTDFTLEADLVLLAMGFVGPEKGGLLTDLGVGYDQRGNVQRDKNWATNVPGVYVAGDMGRGQSLIVWAIAEGRAAAAAVDQFLEGETALPAPITPTMVAQR GT:EXON 1|1-489:0| BL:SWS:NREP 1 BL:SWS:REP 5->474|GLSN_MEDSA|e-118|52.3|465/2194| SEG 287->297|kgkkvviiggg| SEG 456->466|aiaegraaaaa| BL:PDB:NREP 1 BL:PDB:REP 27->455|2vdcG|7e-67|38.3|413/456| RP:PDB:NREP 2 RP:PDB:REP 37->349|2dw4A|2e-53|17.4|304/634| RP:PDB:REP 348->455|2a0iA|2e-06|10.9|92/293| RP:PFM:NREP 1 RP:PFM:REP 148->449|PF07992|6e-16|39.1|258/275|Pyr_redox_2| HM:PFM:NREP 1 HM:PFM:REP 147->450|PF07992|3.9e-37|34.6|185/202|Pyr_redox_2| RP:SCP:NREP 3 RP:SCP:REP 6->127|1nekB1|4e-15|14.5|117/132|a.1.2.1| RP:SCP:REP 144->341|1gt8A4|4e-38|26.6|184/196|c.4.1.1| RP:SCP:REP 348->446|1d5tA1|7e-08|15.2|79/336|c.3.1.3| HM:SCP:REP 10->156|1h7wA1|1.6e-38|38.6|140/182|a.1.2.2|1/1|alpha-helical ferredoxin| HM:SCP:REP 144->405|1lqtA2|1.8e-74|52.6|232/0|c.4.1.1|1/1|Nucleotide-binding domain| HM:SCP:REP 365->471|1djnA3|2.5e-11|36.6|93/234|c.4.1.1|2/2|Nucleotide-binding domain| OP:NHOMO 1799 OP:NHOMOORG 850 OP:PATTERN --2--1----------1--1--1------1--------------111111111-2325542-111--- 1232111333322133211-14222311111144645A8622122211222243323311113221433322222222212211111111222211-----1-1121111---------------4544443442411111333--1-1---1-----------1-------1-----1----222--111-11-------1-------211111---121-11111111122-11111111111111111112---11-------1111----1-111--------11----------------------------------122275555555657112212233221--5241764441111423311--1111113---11122231114333422222222222-11111111121-2113222222111111222122222223333333312211311--------11-------------------123321111112222221111122221111112221111-111221211221421113211111----------411-9A432442364431324222353443312261--1-11111----------2212111322111321111222212522222222254---1232------213232-5555555555-555554555555545555322232112323333333333333323233333--122222222222---111111111121121---1-1-----1---11111111111122222222122221111---------12335333334534412112111111111223111------------31--------------------------323222122111- 11--112-311112121221222222222122212112222222221111111121111111222111-1112121112122222222-11111111111111223-22252211-2-11-12223-316P3-335111-1-221-22-12-12132111-73433273443341-211R2112153352242111212 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 478 STR:RPRED 97.8 SQ:SECSTR ########HEcccccHHHHHHHHTTcEEcEEccccccHHHHHHHHTTcTTcccHHHHHHcHHHHTccHHHHHHHHHcHHHHHHHHHHHcTTccccHcccHHHHHHHccTTGGGcHHHHHHHHHHHHHTTcccccccccccccccccEEEEEcccHHHHHHHHHHHHTTcEEEEEcccccccTTccETEEEEEETTEEEEccccEEccccTcHHHHHHHHHTccEEEccccccEEcTTcccccHHHHHHHHHHHHHHHHHHHHHHHTccccEETTEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHHHHHHcccccTHHHHHHHHHHcccccEEEEEEETTcccEEEccccccEEEccccEEEcccEEEccTTTTTTTTccccTTccccccTTccccccTTEEEcGGGTcccccHHHHHHHHHHHHHHHHcccTTcccccTTccEEEc### DISOP:02AL 1-2, 139-140, 483-489| PSIPRED ccccccccccccccccccccHHHHHccHHHHHcccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHcccccHHccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccEEEEEccccHHHHHHHHHHHccccEEEEEcccccccEEEEccccccccHHHHHHHHHHHHHcccEEEEcEEEEEEEcHHHHHHHccEEEEEccccccEEcccccccccEEEEcHHHHHccccEEccccccccHHcccHHHcccEEEEEcccHHHHHHHHHHHHHcccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccEEEEEEEcccEEEEEEEEEEEEccccEEEccccEEEEEEEEEEEEEEEEcccccHHHHHcccccccccEEEEccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc //