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Nocardia farcinica IFM 10152 (nfar0)
Gene : glyS
DDBJ      :glyS         putative glycyl-tRNA synthetase
Swiss-Prot:SYG_NOCFA    RecName: Full=Glycyl-tRNA synthetase;         EC=6.1.1.14;AltName: Full=Glycine--tRNA ligase;         Short=GlyRS;

Homologs  Archaea  68/68 : Bacteria  240/915 : Eukaryota  194/199 : Viruses  0/175   --->[See Alignment]
c.51.1d.104.1
:466 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->463 1b76A PDBj e-101 48.4 %
:RPS:PDB   7->463 1atiA PDBj 3e-52 48.5 %
:RPS:SCOP  13->344 1g5hA2  d.104.1.1 * 7e-99 24.8 %
:RPS:SCOP  370->463 1adjA1  c.51.1.1 * 7e-20 26.1 %
:HMM:SCOP  8->375 1atiA2 d.104.1.1 * 3.1e-120 43.5 %
:HMM:SCOP  359->463 2g4cA1 c.51.1.1 * 1.6e-31 51.4 %
:RPS:PFM   164->275 PF00587 * tRNA-synt_2b 2e-18 45.0 %
:RPS:PFM   375->459 PF03129 * HGTP_anticodon 5e-11 42.2 %
:HMM:PFM   48->279 PF00587 * tRNA-synt_2b 4.4e-60 38.8 170/173  
:HMM:PFM   372->460 PF03129 * HGTP_anticodon 1.6e-25 38.2 89/94  
:BLT:SWISS 1->466 SYG_NOCFA 0.0 100.0 %
:PROS 79->121|PS00041|HTH_ARAC_FAMILY_1
:PROS 425->431|PS00307|LECTIN_LEGUME_BETA
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56304.1 GT:GENE glyS GT:PRODUCT putative glycyl-tRNA synthetase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1639864..1641264 GB:FROM 1639864 GB:TO 1641264 GB:DIRECTION + GB:GENE glyS GB:PRODUCT putative glycyl-tRNA synthetase GB:PROTEIN_ID BAD56304.1 LENGTH 466 SQ:AASEQ MEKSRVAPKSKVDTVANLAKRRGLVYPCGEIYGGTKSAWDYGPLGVELKENIKRQWWRSMVTSREDVVGLDSSVILPRQVWEASGHVATFTDPLVESLITHKRYRADHLLEAYEEKHGHPPANGLADIRDPETGEPGRWTEPRNFSGLLKTFLGPVDDEEGLHYLRPETAQGIFINYKNVETTARKKPPFGIAQIGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEQWHQYWIDTRLAWYTDLGIDPENLRLYEHPKEKLSHYSTRTVDIEYRFRFQGSEWGELEGVANRTDYDLKTHSEHSGTELSYFDQANNERYIPYVIEPAAGLTRSLMAFLVDAYAEDEAPNAKGGVDVRTVLRLDRRLAPVKAAVLPLSRNADLTPKAKDLAAQLRKHWNVEFDDAGAIGRRYRRQDEIGTPFCITVDFDTLEDQAVTIRERDSMAQERIALDKVEGYLAQHLIGV GT:EXON 1|1-466:0| SW:ID SYG_NOCFA SW:DE RecName: Full=Glycyl-tRNA synthetase; EC=6.1.1.14;AltName: Full=Glycine--tRNA ligase; Short=GlyRS; SW:GN Name=glyQS; Synonyms=glyS; OrderedLocusNames=NFA_14590; SW:KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm;Ligase; Nucleotide-binding; Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->466|SYG_NOCFA|0.0|100.0|466/466| GO:SWS:NREP 6 GO:SWS GO:0004812|"GO:aminoacyl-tRNA ligase activity"|Aminoacyl-tRNA synthetase| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| PROS 79->121|PS00041|HTH_ARAC_FAMILY_1|PDOC00040| PROS 425->431|PS00307|LECTIN_LEGUME_BETA|PDOC00278| SEG 356->368|vdvrtvlrldrrl| BL:PDB:NREP 1 BL:PDB:REP 10->463|1b76A|e-101|48.4|411/442| RP:PDB:NREP 1 RP:PDB:REP 7->463|1atiA|3e-52|48.5|408/437| RP:PFM:NREP 2 RP:PFM:REP 164->275|PF00587|2e-18|45.0|109/170|tRNA-synt_2b| RP:PFM:REP 375->459|PF03129|5e-11|42.2|83/91|HGTP_anticodon| HM:PFM:NREP 2 HM:PFM:REP 48->279|PF00587|4.4e-60|38.8|170/173|tRNA-synt_2b| HM:PFM:REP 372->460|PF03129|1.6e-25|38.2|89/94|HGTP_anticodon| GO:PFM:NREP 9 GO:PFM GO:0000166|"GO:nucleotide binding"|PF00587|IPR002314| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF00587|IPR002314| GO:PFM GO:0005524|"GO:ATP binding"|PF00587|IPR002314| GO:PFM GO:0005737|"GO:cytoplasm"|PF00587|IPR002314| GO:PFM GO:0006412|"GO:translation"|PF00587|IPR002314| GO:PFM GO:0006418|"GO:tRNA aminoacylation for protein translation"|PF00587|IPR002314| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF03129|IPR004154| GO:PFM GO:0005524|"GO:ATP binding"|PF03129|IPR004154| GO:PFM GO:0006412|"GO:translation"|PF03129|IPR004154| RP:SCP:NREP 2 RP:SCP:REP 13->344|1g5hA2|7e-99|24.8|270/278|d.104.1.1| RP:SCP:REP 370->463|1adjA1|7e-20|26.1|92/96|c.51.1.1| HM:SCP:REP 8->375|1atiA2|3.1e-120|43.5|352/394|d.104.1.1|1/1|Class II aaRS and biotin synthetases| HM:SCP:REP 359->463|2g4cA1|1.6e-31|51.4|105/0|c.51.1.1|1/1|Class II aaRS ABD-related| OP:NHOMO 597 OP:NHOMOORG 502 OP:PATTERN 11111111122112111111111111111111111111111111111111111111111111111111 ---1111111111111111-111111111111111111111---11111111111111--111111111111111111----1-----111111111-111111111111---------------111111111111111111111-------------------------------------11111---11-11111-111111111------1111111-----------11111111111111111111----------------------------------------------------------------------1111111111111111-111111211-1-11------------1111---1-1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------1111111111111111111111-1111111111111111112----------111 1111111-311111111111111121111111112111111111111111111111121111111111-1111112222211111111-12112111111111222121212113221211211221112F2-2342111212212111221111322212-1121121121221111181111112321222222224 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 463 STR:RPRED 99.4 SQ:SECSTR #cEEEEcccccHHHHHHHHHHTTcEEETTGGGTccTTcEEEcHHHHHHHHHHHHHHHHHHTTccccEEEEccccEEETTHHHHTcHHHHcEEEEccccccccccccEEHHHHHHHHHHcccccTTcEEcccccccHHcccccEEEEccEEEEccccccGGGEEEEccccHHHHHHTHHHHHHHHTccccEEEEEEEEEEcccccccTGGGcccEEEEEEEEEEEcGGGHHHHHHHHHHHHHHHHHHTTccGGGEEEEEccTTTccTTccEEEEEEEEETTEcEEEEEEEEEEEcTTHHHHHHcccTTTTTcEEccccccEEccEEEEEEEEHHHHHHHHHHHHEEEEEcTTccETccEEEEEcccGGGccccEEEEEccccHHHHHHHHHHHHHHHTccccEEEccccHHHHHHHHHHTTccEEEEEcHHHHTcTEEEEEETTTccEEEEEHHHHHHHHHHHHH## DISOP:02AL 1-11| PSIPRED ccccccccHHHHHHHHHHHHHcccccccHHHHccccccccccccHHHHHHHHHHHHHHHHHEEcccEEEEEccccccHHHHHcccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHccHHHccccccccccHHHHHHHHccccccccccEEEEEccccHHHHHHHHHHHHHccccccEEEEEEEEEEEccccccccEEEEcEEEEEcEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccHHcEEEEEcccHHHccccccEEEEEEEEccccccEEEEEEHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEEEEcccHHHHHHHHHHHHHHHHccccccccccccEEcccccccccEEEEEEEccccHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHcccEEEEEcHHHHHccEEEEEEccccEEEEEEHHHHHHHHHHHHccc //