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Nocardia farcinica IFM 10152 (nfar0)
Gene : gyrA
DDBJ      :gyrA         putative DNA gyrase A subunit
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  910/915 : Eukaryota  182/199 : Viruses  8/175   --->[See Alignment]
b.68.10e.11.1
:836 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   37->500 3ilwA PDBj 0.0 78.9 %
:BLT:PDB   513->820 1zi0B PDBj 3e-63 41.4 %
:RPS:PDB   37->498 1ab4A PDBj e-153 51.6 %
:RPS:PDB   504->615 3dwpA PDBj 1e-36 16.1 %
:RPS:PDB   681->820 1ddtA PDBj 7e-14 11.7 %
:RPS:SCOP  37->498 1ab4A  e.11.1.1 * e-154 51.6 %
:RPS:SCOP  511->821 1wp5A  b.68.10.1 * 4e-99 27.6 %
:HMM:SCOP  13->502 1bjtA_ e.11.1.1 * 7.6e-179 56.1 %
:HMM:SCOP  510->836 1wp5A_ b.68.10.1 * 4e-102 45.9 %
:RPS:PFM   39->469 PF00521 * DNA_topoisoIV e-143 60.9 %
:RPS:PFM   514->562 PF03989 * DNA_gyraseA_C 2e-04 40.8 %
:RPS:PFM   669->717 PF03989 * DNA_gyraseA_C 2e-04 40.8 %
:RPS:PFM   723->768 PF03989 * DNA_gyraseA_C 2e-04 50.0 %
:RPS:PFM   772->815 PF03989 * DNA_gyraseA_C 6e-05 45.5 %
:HMM:PFM   39->482 PF00521 * DNA_topoisoIV 1.7e-151 48.9 423/426  
:HMM:PFM   514->562 PF03989 * DNA_gyraseA_C 7.5e-12 34.7 49/50  
:HMM:PFM   564->600 PF03989 * DNA_gyraseA_C 1.7e-10 29.7 37/50  
:HMM:PFM   622->666 PF03989 * DNA_gyraseA_C 7.7e-09 20.0 45/50  
:HMM:PFM   668->719 PF03989 * DNA_gyraseA_C 3.3e-14 42.0 50/50  
:HMM:PFM   721->770 PF03989 * DNA_gyraseA_C 3.8e-12 34.7 49/50  
:HMM:PFM   771->815 PF03989 * DNA_gyraseA_C 1.2e-12 40.0 45/50  
:BLT:SWISS 1->818 GYRA_MYCS2 0.0 83.5 %
:REPEAT 3|472->581|585->685|688->788

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54849.1 GT:GENE gyrA GT:PRODUCT putative DNA gyrase A subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 9691..12201 GB:FROM 9691 GB:TO 12201 GB:DIRECTION + GB:GENE gyrA GB:PRODUCT putative DNA gyrase A subunit GB:PROTEIN_ID BAD54849.1 LENGTH 836 SQ:AASEQ MTDITLPPESAGDRVEPVDIQQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDNGYRPDRGYVKSARPVSDTMGNYHPHGDSAIYDTLVRMAQPWAMRYPLVDGQGNFGSRGNDGAAAMRYTECRLTPLAMEMLREIDHETVDFIPNYDGKTQEPVVLPSRVPNMLMNGSNGIAVGMATNIPPHNLTELAEAIYWALDNHDADEETTLAACMERIKGPDFPTAGLIVGTQGIHDAYTTGRGSIKMRGVVEIEEDNRGRTTIVITELPYQVNTDNFINAIAEQVKDGKIAGIADIHDESSDRVGLRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMIRLYVNHQLDVIIRRTRYLLRKAEERAHILRGLVKALDALDEVIALIRRSANTDTARTGLMELLDIDEIQATAILDMQLRRLSALERQKIIDDLARIEAEIADYKDILDKPERQRAIVRDELAEIVEKYGDERRTQIVSADGDVADEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVKHFFVTSTHDWLLFFTNKGRVYRAKAYELPEANRTARGQHVANLLAFQPDEKIAQIIQIKTYEDAPYLVLATKNGLVKKSRLSDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSAQGQSIRFSATDEALRPMGRATSGVQGMRFNAEDELLSLNVVRPGTYLLVATSGGYAKRTAIEEYTAQGRGGKGVLTIQFDARRGTLVGALIVDDDDELYAITSGGGVIRTAANQVRKAGRQTKGVRLMNLGEGDTLLAIARNADEPDAVDGGDDTGSSQQ GT:EXON 1|1-836:0| BL:SWS:NREP 1 BL:SWS:REP 1->818|GYRA_MYCS2|0.0|83.5|818/842| NREPEAT 1 REPEAT 3|472->581|585->685|688->788| BL:PDB:NREP 2 BL:PDB:REP 37->500|3ilwA|0.0|78.9|464/464| BL:PDB:REP 513->820|1zi0B|3e-63|41.4|295/296| RP:PDB:NREP 3 RP:PDB:REP 37->498|1ab4A|e-153|51.6|446/477| RP:PDB:REP 504->615|3dwpA|1e-36|16.1|112/116| RP:PDB:REP 681->820|1ddtA|7e-14|11.7|134/523| RP:PFM:NREP 5 RP:PFM:REP 39->469|PF00521|e-143|60.9|422/434|DNA_topoisoIV| RP:PFM:REP 514->562|PF03989|2e-04|40.8|49/50|DNA_gyraseA_C| RP:PFM:REP 669->717|PF03989|2e-04|40.8|47/50|DNA_gyraseA_C| RP:PFM:REP 723->768|PF03989|2e-04|50.0|44/50|DNA_gyraseA_C| RP:PFM:REP 772->815|PF03989|6e-05|45.5|44/50|DNA_gyraseA_C| HM:PFM:NREP 7 HM:PFM:REP 39->482|PF00521|1.7e-151|48.9|423/426|DNA_topoisoIV| HM:PFM:REP 514->562|PF03989|7.5e-12|34.7|49/50|DNA_gyraseA_C| HM:PFM:REP 564->600|PF03989|1.7e-10|29.7|37/50|DNA_gyraseA_C| HM:PFM:REP 622->666|PF03989|7.7e-09|20.0|45/50|DNA_gyraseA_C| HM:PFM:REP 668->719|PF03989|3.3e-14|42.0|50/50|DNA_gyraseA_C| HM:PFM:REP 721->770|PF03989|3.8e-12|34.7|49/50|DNA_gyraseA_C| HM:PFM:REP 771->815|PF03989|1.2e-12|40.0|45/50|DNA_gyraseA_C| GO:PFM:NREP 25 GO:PFM GO:0003677|"GO:DNA binding"|PF00521|IPR002205| GO:PFM GO:0003918|"GO:DNA topoisomerase (ATP-hydrolyzing) activity"|PF00521|IPR002205| GO:PFM GO:0005524|"GO:ATP binding"|PF00521|IPR002205| GO:PFM GO:0005694|"GO:chromosome"|PF00521|IPR002205| GO:PFM GO:0006265|"GO:DNA topological change"|PF00521|IPR002205| GO:PFM GO:0003677|"GO:DNA binding"|PF03989|IPR006691| GO:PFM GO:0003916|"GO:DNA topoisomerase activity"|PF03989|IPR006691| GO:PFM GO:0005524|"GO:ATP binding"|PF03989|IPR006691| GO:PFM GO:0005694|"GO:chromosome"|PF03989|IPR006691| GO:PFM GO:0006265|"GO:DNA topological change"|PF03989|IPR006691| GO:PFM GO:0003677|"GO:DNA binding"|PF03989|IPR006691| GO:PFM GO:0003916|"GO:DNA topoisomerase activity"|PF03989|IPR006691| GO:PFM GO:0005524|"GO:ATP binding"|PF03989|IPR006691| GO:PFM GO:0005694|"GO:chromosome"|PF03989|IPR006691| GO:PFM GO:0006265|"GO:DNA topological change"|PF03989|IPR006691| GO:PFM GO:0003677|"GO:DNA binding"|PF03989|IPR006691| GO:PFM GO:0003916|"GO:DNA topoisomerase activity"|PF03989|IPR006691| GO:PFM GO:0005524|"GO:ATP binding"|PF03989|IPR006691| GO:PFM GO:0005694|"GO:chromosome"|PF03989|IPR006691| GO:PFM GO:0006265|"GO:DNA topological change"|PF03989|IPR006691| GO:PFM GO:0003677|"GO:DNA binding"|PF03989|IPR006691| GO:PFM GO:0003916|"GO:DNA topoisomerase activity"|PF03989|IPR006691| GO:PFM GO:0005524|"GO:ATP binding"|PF03989|IPR006691| GO:PFM GO:0005694|"GO:chromosome"|PF03989|IPR006691| GO:PFM GO:0006265|"GO:DNA topological change"|PF03989|IPR006691| RP:SCP:NREP 2 RP:SCP:REP 37->498|1ab4A|e-154|51.6|446/477|e.11.1.1| RP:SCP:REP 511->821|1wp5A|4e-99|27.6|304/323|b.68.10.1| HM:SCP:REP 13->502|1bjtA_|7.6e-179|56.1|458/760|e.11.1.1|1/1|Type II DNA topoisomerase| HM:SCP:REP 510->836|1wp5A_|4e-102|45.9|320/0|b.68.10.1|1/1|GyrA/ParC C-terminal domain-like| OP:NHOMO 1948 OP:NHOMOORG 1122 OP:PATTERN -----------------------111111111-----------1111111111--------111---- 1111211111111111112-12111211111122221111211122222222222222222222221222222222221111111111222212222112222222222222222222222222211111111111111111111122222222222222222222222222222222222221111111112222222222222222222222222222212222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222212122222222222221222222222111221122111121111111111112222222222222222222222222222222222-22223222222222222222222222222222222222222222222222222221111111111112222222222222111112222222222222222222222222222222232222222222222222222222221121222222222111222112121111111111111111111111122111111111111111111111111111222223222222222222222222222222221-2222211111122222222222222222-22222222222222222222222222222222222222222222222222221222222222222112222222222222222222222222112222222122222222222222222222222222222222222222222222222322222222222222222212222222222222221211112-22222222222222222231111111111122 221122116221112111111111111111111111111121111111111111111111111-1111-1111-1111111-111111-1211111111112111111421222322111-11112-215A1-3152--11-112121-1---1-422113912111111-44113222F2233232121233433222 ---1---------------1---------------111-1----------------------------------------------------------------------------------------------------------------------------------1-1-- STR:NPRED 820 STR:RPRED 98.1 SQ:SECSTR cccccccHHHHHHHHHHHHHHHHHHTTcccccHHHHcTTTcccTTTcccHHHHHHHHHHHHTTcccccccEEHHHHHHHHHHHTccccHHHHHHHHHHTTcTTTcccccEEEEcccccTTccccccTTTcEEEEcTTHHHHcTTTTTTcccEEEcTTcccEEEccccccccHHHHHcEEEccccccEEEccccHHHHHHHHHHHHHcccccTTccHHHHTTTccccccccccEEcccHHHHHHHHHcEEEEEEEcEEEEEcccEETTEEEEEEccTTccHHHHHHHHHHHHTTTcccccccEEEcccccccccEEEEccHHHccHHHHHHHHHHcTTEEEEEEEcEEEETTEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHcccHHHHHHHHHHcEEccHHHHHHHHTccGGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccEEHHHHHHHHHHccGGGcccEEEEccGGGHHHcGGcccccHHHHTTTcTTcEEEEEcccccGGGGGGcHHHHHHHcEEEEEETTTTGGGTccHHHHHHHHHHHHHHHHcHHHHEEEEEEccccccHHHTcccTTccccTTcccccccHHEHHHHHHHHHHHHHHHHHHHHHTccGGGccHHHHHHHHTHHHHHccGGGccccHHHHHHHHHHHcEEEEccccTTcTTccEEETTEEEEEccTGGGEEEccccEEEEEEEEEEEEEccccEEEcEEEETcEEcTTTcEEEETTEEEEEEEEEccccEEEEEEcccEEEcTTccEE################ DISOP:02AL 1-4, 536-544, 824-836| PSIPRED ccccccccccccccEEcccHHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEcccccEEccEEccccccEEEEEcccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHccccccccccEEEcHHHHHHHHHccccEEEEEEEEEEEEcccccEEEEEEEccccccHHHHHHHHHHHHHccccccHHHHHHHccccccEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccEEEccHHcccHHHHcccccEEEEEccccEEEEEEcccccccccccccccccccccccEEEEEEEEccccEEEEEEccccEEEEEcEEccccccccccEEEEEccccccccEEEEEEEEcccccccEEEEEEcccEEEEEEHHHHHccccccEEEEEcccccEEEEEEEEccccEEEEEEccccEEEEccccccccccccccccEEEEEcccccEEEEEEEEcccccEEEEEccccEEEccHHHHHcccccccEEEEEEcccccccEEEEEEEccccEEEEEEcccEEEEEEHHHccccccccccEEEEEEccccEEEEEEEccccccHHccccccccccc //