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Nocardia farcinica IFM 10152 (nfar0)
Gene : gyrB
DDBJ      :gyrB         putative DNA gyrase B subunit
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  910/915 : Eukaryota  166/199 : Viruses  9/175   --->[See Alignment]
c.52.1d.122.1d.14.1d.173.1d.175.1e.11.1
:696 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   31->427 1ei1A PDBj 3e-80 44.7 %
:BLT:PDB   470->673 2zjtA PDBj 7e-86 89.6 %
:RPS:PDB   45->427 3cwvB PDBj 2e-97 25.4 %
:RPS:PDB   450->691 1bgwA PDBj 1e-61 27.4 %
:RPS:SCOP  33->207 1j6rA  d.173.1.2 * 5e-41 7.6 %
:RPS:SCOP  225->353 1pyyA3  d.175.1.1 * 2e-20 17.5 %
:RPS:SCOP  365->664 1dc1A  c.52.1.11 * 6e-81 12.6 %
:HMM:SCOP  33->244 1s16A2 d.122.1.2 * 1e-66 49.8 %
:HMM:SCOP  277->448 1kijA1 d.14.1.3 * 2.3e-60 50.6 %
:HMM:SCOP  450->691 1bjtA_ e.11.1.1 * 2.9e-87 54.2 %
:RPS:PFM   277->427 PF00204 * DNA_gyraseB 7e-41 52.0 %
:RPS:PFM   474->573 PF01751 * Toprim 3e-09 35.4 %
:RPS:PFM   624->684 PF00986 * DNA_gyraseB_C 4e-22 70.5 %
:HMM:PFM   277->446 PF00204 * DNA_gyraseB 7.9e-66 55.6 169/173  
:HMM:PFM   623->684 PF00986 * DNA_gyraseB_C 1.4e-30 64.5 62/65  
:HMM:PFM   61->198 PF02518 * HATPase_c 1.7e-20 30.8 104/111  
:HMM:PFM   475->574 PF01751 * Toprim 1.8e-08 17.9 84/96  
:BLT:SWISS 34->696 GYRB_MYCPA 0.0 78.6 %
:PROS 478->486|PS00177|TOPOISOMERASE_II
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54848.1 GT:GENE gyrB GT:PRODUCT putative DNA gyrase B subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 7529..9619 GB:FROM 7529 GB:TO 9619 GB:DIRECTION + GB:GENE gyrB GB:PRODUCT putative DNA gyrase B subunit GB:PROTEIN_ID BAD54848.1 LENGTH 696 SQ:AASEQ MCCAIATRRSASKESYRPVAAKHSNESGSKSTNYGASSITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGYATRVDVTLLADGGVEVVDDGRGIPVEMHAQGIPTVEVVMTQLHAGGKFDSESYAVSGGLHGVGISVVNALSSRVEVEIDVDGYHWSQTYKEATPSKLVKGEPTDRTGTTVRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVSESDVTDEIVSETAEAPKHGEPTGEAASEHKVKTRTYHYPGGLEDFVRHINRTKQAIHNSVVSFTGKGTGHELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVAEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQRSEPEFAYSDRERDGLLERGLAAGKKINKDDGIQRYKGLGEMNPKELWETTMDPSVRVLRQVTLDDAAAADELFSVLMGEDVEARRSFITRNAKDVRFLDV GT:EXON 1|1-696:0| BL:SWS:NREP 1 BL:SWS:REP 34->696|GYRB_MYCPA|0.0|78.6|663/677| PROS 478->486|PS00177|TOPOISOMERASE_II|PDOC00160| SEG 94->103|dggvevvddg| SEG 354->363|kdkkllkekd| SEG 428->445|vqkavssaqarvaarkar| SEG 563->569|tllltll| BL:PDB:NREP 2 BL:PDB:REP 31->427|1ei1A|3e-80|44.7|365/391| BL:PDB:REP 470->673|2zjtA|7e-86|89.6|183/185| RP:PDB:NREP 2 RP:PDB:REP 45->427|3cwvB|2e-97|25.4|303/311| RP:PDB:REP 450->691|1bgwA|1e-61|27.4|234/679| RP:PFM:NREP 3 RP:PFM:REP 277->427|PF00204|7e-41|52.0|150/169|DNA_gyraseB| RP:PFM:REP 474->573|PF01751|3e-09|35.4|99/110|Toprim| RP:PFM:REP 624->684|PF00986|4e-22|70.5|61/65|DNA_gyraseB_C| HM:PFM:NREP 4 HM:PFM:REP 277->446|PF00204|7.9e-66|55.6|169/173|DNA_gyraseB| HM:PFM:REP 623->684|PF00986|1.4e-30|64.5|62/65|DNA_gyraseB_C| HM:PFM:REP 61->198|PF02518|1.7e-20|30.8|104/111|HATPase_c| HM:PFM:REP 475->574|PF01751|1.8e-08|17.9|84/96|Toprim| GO:PFM:NREP 10 GO:PFM GO:0003677|"GO:DNA binding"|PF00204|IPR013506| GO:PFM GO:0003918|"GO:DNA topoisomerase (ATP-hydrolyzing) activity"|PF00204|IPR013506| GO:PFM GO:0005524|"GO:ATP binding"|PF00204|IPR013506| GO:PFM GO:0005694|"GO:chromosome"|PF00204|IPR013506| GO:PFM GO:0006265|"GO:DNA topological change"|PF00204|IPR013506| GO:PFM GO:0003677|"GO:DNA binding"|PF00986|IPR002288| GO:PFM GO:0003918|"GO:DNA topoisomerase (ATP-hydrolyzing) activity"|PF00986|IPR002288| GO:PFM GO:0005524|"GO:ATP binding"|PF00986|IPR002288| GO:PFM GO:0005694|"GO:chromosome"|PF00986|IPR002288| GO:PFM GO:0006265|"GO:DNA topological change"|PF00986|IPR002288| RP:SCP:NREP 3 RP:SCP:REP 33->207|1j6rA|5e-41|7.6|171/197|d.173.1.2| RP:SCP:REP 225->353|1pyyA3|2e-20|17.5|103/120|d.175.1.1| RP:SCP:REP 365->664|1dc1A|6e-81|12.6|277/310|c.52.1.11| HM:SCP:REP 33->244|1s16A2|1e-66|49.8|209/213|d.122.1.2|1/1|ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase| HM:SCP:REP 277->448|1kijA1|2.3e-60|50.6|172/172|d.14.1.3|1/1|Ribosomal protein S5 domain 2-like| HM:SCP:REP 450->691|1bjtA_|2.9e-87|54.2|236/760|e.11.1.1|1/1|Type II DNA topoisomerase| OP:NHOMO 1923 OP:NHOMOORG 1107 OP:PATTERN -----------------------111111111-----------1111111111--------111---- 1111211111111111112-12111311111122221111212122222222222222222222221223222222221111111111222212222112222222222222222222222222211111111111111111111111111111111111111111111111111111111111111111112222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222322222234222222212122222222222221222222222111221122111121111111111113222222222222222222222222222222222-22223222222222222222222222222222222222222222222222222221111111111112222222222222111112222222222222222222222222222222232222222222222222222222221121222222222111222112121111111111111111111111132111111111111111111111111111222222222222222222222222222222221-2222211111122222222222222222-22122222222222222222222222222222222222222222222222221222222222222112222222222222322222222222212222222222222222222222222222222222222222222222222222222222222222222222222212222222222222221211112-22222222222222222221111111111122 22-12-113111---11111111111111111111-1111-1111111111111111--111-1-1---1--1-11-1-----1--11-121121111111-11-1112212223341212222221319F2-426121121223221122-13-422212-12121111-42122122F2222252381533331112 ----1--------------1---------------111-1----------------------------------------------------------------------------------------------------------------------------------111-- STR:NPRED 665 STR:RPRED 95.5 SQ:SECSTR ##############################cccccGGGcccccTHHHHHHcHHHHHccccHHHHHHHHHHHHHHHHHHHHTTcccEEEEEEcTTccEEEEEccccccEEEEEcccHHHHHHTEEEEEEEEcccccccccccccccHHHHHHHTEEEEEEEEEETcccEEEEEETTEEccccccccccccEEEEEEEEcTTTcccccccHHHHHHHHHHHHHHcTTcEEEEEETTTTEEEHHHHHHHHHTcccccTHHHcTTccccTccEEEEEcTTHHHHHHHHHHTTccccccccEEEEEEETTEEEEEEEEEccccccEEEEEETTEEcTTccHHHHHHHHHHHHHHHHHHTccGGHHHHccGccHHHHTTTEEEEEEEEccGGGcccccTTccccTTHHHHHHHHHHHHHHHHHTTcTTHHHHHHTTccHHHcTHTTccHHHHHHHHHHHHHHEcHTTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEETTcTTcccEEEcccccTTGGGGEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEcccccGGGEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHTTcHHHHHHTTcccEEEEEEccccHHHHHHHHHHHHHTcccEEEETTcHHHHHHHHHHHHcccTTTcccHHHHHHHHHHHHTTcHHHH# DISOP:02AL 1-39, 181-182, 252-262, 442-462| PSIPRED cccccccccccccccccccccccccccccccccccHHHEEEEcccHHHHHcccEEEcccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccEEEEEEcccccccccccccccEEEEEEEEEEcccccccccEEEEcccccHHHHHEEEEEEEEEEEEEEccEEEEEEEEcccccccEEccccccccEEEEEEEcHHHHccccccHHHHHHHHHHHHHcccccEEEEEEEEcccccccHHHHcccccccccccccccccccccccEEEEEccccHHHHHHHHHcccccccccEEEEEEEccccEEEEEEEEcccccEEEEEEEccEEccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEccccHHHHHHHcccccEEEEEEcccEEEcccccHHHHHHHHHHHHHHHHHcccccccccHHHcccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEEcccEEEEEEcccEEEEEccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHcHHHcEEcEEcccHHHHHHHHHHHHHccccHHHHHHHHHHcccHHcccc //