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Nocardia farcinica IFM 10152 (nfar0)
Gene : hsdM
DDBJ      :hsdM         putative restriction-modification system methyltransferase
Swiss-Prot:             

Homologs  Archaea  23/68 : Bacteria  394/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.66.1
:514 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   120->395 2okcA PDBj 1e-25 36.5 %
:RPS:PDB   5->507 2ar0A PDBj 4e-31 22.5 %
:RPS:SCOP  130->510 2ar0A1  c.66.1.45 * 2e-21 21.4 %
:HMM:SCOP  4->511 2ar0A1 c.66.1.45 * 1.5e-119 35.0 %
:RPS:PFM   146->396 PF02384 * N6_Mtase 1e-44 41.4 %
:HMM:PFM   144->477 PF02384 * N6_Mtase 4.2e-68 32.0 297/311  
:HMM:PFM   6->136 PF12161 * HsdM_N 1.9e-18 25.2 115/132  
:BLT:SWISS 89->508 T1ME_ECOLX 4e-42 31.8 %
:PROS 277->283|PS00092|N6_MTASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57608.1 GT:GENE hsdM GT:PRODUCT putative restriction-modification system methyltransferase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2924075..2925619 GB:FROM 2924075 GB:TO 2925619 GB:DIRECTION + GB:GENE hsdM GB:PRODUCT putative restriction-modification system methyltransferase GB:PROTEIN_ID BAD57608.1 LENGTH 514 SQ:AASEQ MITGDIKNKVDAVWDAFWTGGISNPLEVMEQITYLLFIRRLDDEQTRALERANLLAQPLEGNPFPEGNDPDGRPYNDLRWSVFRDRHAEEMFDIVANRVFPFIKEMRGEDSTYAHFMKDARLTIPNPGMLQRVVDRLDKVPMENRDTKGDIYEYLLAKIASAGQNGQFRTPRHIIELMVHMMAPKPGDTIVDPASGTCGFLVAASEYMRAHHADAINSGAGRHHYHHKMFHGFDFDNTMLRIGSMNMLLHGIEQPDIRYRDSLAEANTGDAEAYSLVLANPPFAGSLDYENTAKDLQQIAKTKKTELLFLALFLRLLKPGGRAAVIVPDGVLFGSSKAHKELRRILVEEQKLDAVVKLPSGVFKPYAGVSTAILFFTKTNSGGTDNVWFYDVRAEGYSLDDKRSALLSEDKIGALAELTEAEHEKNNLPDVLRRWNAREGSELDRVRTDQSFCVPKDEIAAQGYDLSLNRYKEVVQEDIAHRSPGEILDELDRLEKEIIDGMARLREILAGGAA GT:EXON 1|1-514:0| BL:SWS:NREP 1 BL:SWS:REP 89->508|T1ME_ECOLX|4e-42|31.8|390/490| PROS 277->283|PS00092|N6_MTASE|PDOC00087| SEG 300->318|aktkktellflalflrllk| BL:PDB:NREP 1 BL:PDB:REP 120->395|2okcA|1e-25|36.5|252/413| RP:PDB:NREP 1 RP:PDB:REP 5->507|2ar0A|4e-31|22.5|423/476| RP:PFM:NREP 1 RP:PFM:REP 146->396|PF02384|1e-44|41.4|239/273|N6_Mtase| HM:PFM:NREP 2 HM:PFM:REP 144->477|PF02384|4.2e-68|32.0|297/311|N6_Mtase| HM:PFM:REP 6->136|PF12161|1.9e-18|25.2|115/132|HsdM_N| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF02384|IPR003356| GO:PFM GO:0006306|"GO:DNA methylation"|PF02384|IPR003356| GO:PFM GO:0008170|"GO:N-methyltransferase activity"|PF02384|IPR003356| RP:SCP:NREP 1 RP:SCP:REP 130->510|2ar0A1|2e-21|21.4|365/485|c.66.1.45| HM:SCP:REP 4->511|2ar0A1|1.5e-119|35.0|457/0|c.66.1.45|1/1|S-adenosyl-L-methionine-dependent methyltransferases| OP:NHOMO 601 OP:NHOMOORG 419 OP:PATTERN ----1--------1---------------1---1121--211-12-1113226-1-----11-----1 11---112---1-2-1-11-12--1-11111-11-12----211-1--1----111----1-----------------1--2-------211--1--------11---1----------------113142--2---11-31--3-3-41223----------21--3421-------------1-------1------11----1-----22-----121----1-1--111-----------------111---1----12--122-2------1---1-------12222222222211111111-1111-12---222--1---111-11-11-----1-1-----11-22---1-122111--111--1151--1-------1---2--1-1-1111111111------------1------112---1-2-11----11-12111111111---1------------------12112---11----------12---1---------------1-11-1111--1--1-311113--113-5--4-111--1----1-41-2-11-26---3-1311--31-5--422-1-1-11---11-11121--1-------11-1-33-1223-------31-511-5-11-2--3-1--131---------1-31--111111112--1---112-11111111111---1121-11-1---122--1-1-111-1-1-------2----111-------------1111122111--21223121----11-11-12--1--1--11-1-22--21-1-21-111211---4-21114-1-1-112221------1--111---------1---1-1--2---2-------11----11-1-1------21 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--1------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 501 STR:RPRED 97.5 SQ:SECSTR ####HHHHHHHHHHHHHHTTTccTTEcHHHHHHHHHHHHHHHHTcHHHHccTETTEEETTTcHHHHHHHHHHcHHHTccHHHHHTccHHHHHHHHHHHHHHTHHHHcccTHHHHHHHHHHHHHccTTccTccccHHHHHHHTTcccccccHHHHHHHHHHHHTccccccccHHHHHHHHHHHcccTTccEEETTcTTTHHHHHHHHHHHTTTTTTTTcHHHHHHHHHTcEEEEEccHHHHHHHHHHHTTTccccGGGTccEEEccTTcHTcccEEEEEEccccTTcccccccccccccEcTccccHHHHHHHHHHHEEEEEEEEEEEEHHHHHcGccTHHHHHHHHHHHEEEEEEEEcccccccccccccEEEEEEEEcccccccEEEEEEccTTcccccccEEEEccTTccc####cccccccGGGTHHHHHHHcccTTcccccccccccTTcTTcEEcccGGGTTccTTEEEEHHHHHHTcccccccccEEcccccHHHHHHHHHHH##### DISOP:02AL 1-2, 513-514| PSIPRED cccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccccEEEEccEEcccccccccccEEEEEcccccccccccHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEEcccEEcccccHHHHHHHHHHHcccEEEEEEccccccccccccEEEEEEEEcccccccccEEEEEEEcccHHccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccHHccccEEccHHHHHHccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //