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Nocardia farcinica IFM 10152 (nfar0)
Gene : hsdS
DDBJ      :hsdS         putative restriction-modification system specificity determinant
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  81/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.287.1
:394 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   60->155 1admA PDBj 3e-08 9.6 %
:RPS:PDB   275->356 1admA PDBj 2e-04 6.0 %
:RPS:SCOP  44->189 1ydxA2  d.287.1.2 * 2e-11 9.3 %
:RPS:SCOP  196->394 1yf2A1  d.287.1.2 * 4e-18 15.4 %
:HMM:SCOP  2->187 1yf2A1 d.287.1.2 * 3.3e-22 26.3 %
:HMM:SCOP  195->394 1yf2A1 d.287.1.2 * 5e-22 23.3 %
:RPS:PFM   114->159 PF01420 * Methylase_S 7e-06 35.6 %
:RPS:PFM   194->367 PF01420 * Methylase_S 2e-05 20.7 %
:HMM:PFM   58->170 PF01420 * Methylase_S 3.6e-10 22.4 107/167  
:BLT:SWISS 30->152 CCA_COXBU 2e-04 26.0 %
:BLT:SWISS 197->356 T1SE_ECOLX 5e-17 30.8 %
:REPEAT 2|3->157|196->360
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57609.1 GT:GENE hsdS GT:PRODUCT putative restriction-modification system specificity determinant GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2925616..2926800 GB:FROM 2925616 GB:TO 2926800 GB:DIRECTION + GB:GENE hsdS GB:PRODUCT putative restriction-modification system specificity determinant GB:PROTEIN_ID BAD57609.1 LENGTH 394 SQ:AASEQ MSNWPLVPLGDILAQDGQTERIANTESEKFLTIRLYGKGLVERSIGSGKTPKPFVGYRVKPGQFVYSRIDARNGAYGVVPDELDGAVCSKDFPKFDVDQQRADENYLLRLVQTRDFYRKVQDLSFGATNRQRVKEEEFLRLRIPLPPIEEQRRIAAILDHADALRAKRREALARLDELTQSIFIDMFGDPVANERNWPFGTVGDFVDRFEGGKNIVGSGDSTDGYRVLKVSAVTSLSYRESESKPLPEGYVPPSNHIVQRGDLLFSRANTSELVGATALVTETDGRTALPDKLWRFKWKNRTAAVPGYVAALFQRPSFRQTISDRATGSSGSMKNISQSKVLSIPLGIPPVELQEKFESVRVEVDSMKNSNRIALAELDALFASLQSRAFRGEL GT:EXON 1|1-394:0| BL:SWS:NREP 2 BL:SWS:REP 30->152|CCA_COXBU|2e-04|26.0|123/376| BL:SWS:REP 197->356|T1SE_ECOLX|5e-17|30.8|159/594| NREPEAT 1 REPEAT 2|3->157|196->360| SEG 161->178|adalrakrrealarldel| RP:PDB:NREP 2 RP:PDB:REP 60->155|1admA|3e-08|9.6|94/415| RP:PDB:REP 275->356|1admA|2e-04|6.0|78/415| RP:PFM:NREP 2 RP:PFM:REP 114->159|PF01420|7e-06|35.6|45/167|Methylase_S| RP:PFM:REP 194->367|PF01420|2e-05|20.7|155/167|Methylase_S| HM:PFM:NREP 1 HM:PFM:REP 58->170|PF01420|3.6e-10|22.4|107/167|Methylase_S| GO:PFM:NREP 4 GO:PFM GO:0003677|"GO:DNA binding"|PF01420|IPR000055| GO:PFM GO:0006304|"GO:DNA modification"|PF01420|IPR000055| GO:PFM GO:0003677|"GO:DNA binding"|PF01420|IPR000055| GO:PFM GO:0006304|"GO:DNA modification"|PF01420|IPR000055| RP:SCP:NREP 2 RP:SCP:REP 44->189|1ydxA2|2e-11|9.3|140/181|d.287.1.2| RP:SCP:REP 196->394|1yf2A1|4e-18|15.4|188/220|d.287.1.2| HM:SCP:REP 2->187|1yf2A1|3.3e-22|26.3|179/0|d.287.1.2|1/2|DNA methylase specificity domain| HM:SCP:REP 195->394|1yf2A1|5e-22|23.3|189/0|d.287.1.2|2/2|DNA methylase specificity domain| OP:NHOMO 92 OP:NHOMOORG 84 OP:PATTERN ---------------------------------------1------1---2----------------- ---------------------1-----------1-11----1---1-2-----------------------------------------------------------------------------1-1-11--1--1---------1---112--11-------------1----------------------------------------11------------1------------------------1-----------------------------------------1---------------------11---111------111-----1------------------------1-------------3---------------1-------------------------------------1--------1--------1------------------------------------------------------------------------1-----11-1------1-1--1----1----2-----1-------2--11---1----1--------1----2----------1----------------------------11-----------1---1-------1------------------1---1---1-1----------1-----1--1------111----------1-------------------------------------------11-------------------------------------------1---------------1---------1------------------------------------------------------------1----------1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 172 STR:RPRED 43.7 SQ:SECSTR ###########################################################GGGGccEEEEcccccccccEEEEcccccccccEEEEEcTTcEEcHHHHHHHHTcH#HHHHHHHHHHTTc#cccccHHHHTTcEEETEEcccccccc#######################################################################################################################cccccEEEEcccccccccEEEEEcTTcEE#cHHHHHHHHTcHHHHHHHH###HHHTTccccccHHHHcEEETTTEEcccccc###################################### DISOP:02AL 17-27| PSIPRED cccccEEEEHHHHEEccccccccccccccEEEEEEcccccccccccccEEcccccEEEEEcccEEEEEEcccccEEEEEEEccccEEEcccEEEEEcccccccHHHHHHHHHcHHHHHHHHHHcccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccccccccccEEEEEEEEEEEEEcccccEEcccccccccccccccccEEEEEcccHHHccEEEEEEEccccEEEccEEEEEEEcccccccHHHHHHHHHcHHHHHHHHHHHcccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc //