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Nocardia farcinica IFM 10152 (nfar0)
Gene : katB
DDBJ      :katB         putative catalase
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  473/915 : Eukaryota  178/199 : Viruses  0/175   --->[See Alignment]
c.23.16e.5.1
:719 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   25->712 1ggeA PDBj e-179 52.2 %
:RPS:PDB   25->712 3ej6A PDBj 0.0 42.1 %
:RPS:SCOP  37->520 1a4eA  e.5.1.1 * e-158 33.5 %
:RPS:SCOP  575->719 1cf9A1  c.23.16.3 * 4e-33 33.8 %
:HMM:SCOP  12->555 1cf9A2 e.5.1.1 * 1e-209 51.4 %
:HMM:SCOP  551->673 1sy7A1 c.23.16.3 * 1e-20 31.4 %
:RPS:PFM   60->400 PF00199 * Catalase e-116 59.4 %
:RPS:PFM   463->520 PF06628 * Catalase-rel 1e-07 42.1 %
:RPS:PFM   603->672 PF01965 * DJ-1_PfpI 2e-06 43.5 %
:HMM:PFM   42->429 PF00199 * Catalase 1.1e-165 53.9 382/384  
:HMM:PFM   453->521 PF06628 * Catalase-rel 1.4e-24 47.1 68/68  
:HMM:PFM   584->696 PF01965 * DJ-1_PfpI 6.1e-16 29.5 112/148  
:BLT:SWISS 25->719 CATE_MYCAV 0.0 67.8 %
:PROS 373->381|PS00437|CATALASE_1
:PROS 78->94|PS00438|CATALASE_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57554.1 GT:GENE katB GT:PRODUCT putative catalase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2871671..2873830 GB:FROM 2871671 GB:TO 2873830 GB:DIRECTION + GB:GENE katB GB:PRODUCT putative catalase GB:PROTEIN_ID BAD57554.1 LENGTH 719 SQ:AASEQ MTGHTPDTPDNAADADHAAGGADRKQRQLDAHRVDREQGHLTTQQGVRVRHTDDALSAGARGPTLLDDFHAREKITHFDHERIPERVVHARGAGAYGYFQPYDDRLAEYTVAKFLTDPAERTPVFVRFSTVAGSRGSADTVRDVRGFATKFYTSQGNYDLVGNNFPVFFIQDGIKFPDFVHAVKPEPHNEIPQAASAHDTLWDFVSLQPETLHAIMWLMSDRALPRSYRMMQGFGVHTFRFLDAAGTPTFVKFHWTPKLGVHSLVWDECQQIAGRDPDYNRRDLWDCIEAGHYPEWELGVQLIPVEKEFDFDFDLLDATKLVPEEQVPVLPVGRMVLDRNPDNFFAETEQVAFHTANLVPGIDFTDDPLLQLRNFSYLDTQLIRLGGPNFAQIPINRPVADVRNHQQDGYGQHAIPRGQASYTVNSIGGGCPVVGGDGSYEHYPRQVDGRAQRRRAESFREYYRQPRMFWRSMSAPEAEHIVEAFAFELGKVQRVEIRERTLGQLVRIDPDLAVRVAGRLGLPAPPPDPEAGTDAFVSPALSQAHTAKDSIATRQVAVLAADGVDAAGVRALRSALTERGAIVEVIASHGGMVHADGGDGDTLPVDRTLMTVASVLYDGVVVAGGQTGVETLTRNGEAVHFVLEAFKHAKPVAAFGAGVSLLRIAGILDAARAHDADPATGVITTEARGDGLDEEFVTDLARALANHRTWQRATSAIPA GT:EXON 1|1-719:0| BL:SWS:NREP 1 BL:SWS:REP 25->719|CATE_MYCAV|0.0|67.8|692/706| PROS 373->381|PS00437|CATALASE_1|PDOC00395| PROS 78->94|PS00438|CATALASE_2|PDOC00395| SEG 4->23|htpdtpdnaadadhaaggad| SEG 309->317|fdfdfdlld| SEG 321->332|lvpeeqvpvlpv| SEG 428->438|gggcpvvggdg| SEG 556->572|vavlaadgvdaagvral| BL:PDB:NREP 1 BL:PDB:REP 25->712|1ggeA|e-179|52.2|669/727| RP:PDB:NREP 1 RP:PDB:REP 25->712|3ej6A|0.0|42.1|667/681| RP:PFM:NREP 3 RP:PFM:REP 60->400|PF00199|e-116|59.4|335/337|Catalase| RP:PFM:REP 463->520|PF06628|1e-07|42.1|57/66|Catalase-rel| RP:PFM:REP 603->672|PF01965|2e-06|43.5|69/135|DJ-1_PfpI| HM:PFM:NREP 3 HM:PFM:REP 42->429|PF00199|1.1e-165|53.9|382/384|Catalase| HM:PFM:REP 453->521|PF06628|1.4e-24|47.1|68/68|Catalase-rel| HM:PFM:REP 584->696|PF01965|6.1e-16|29.5|112/148|DJ-1_PfpI| GO:PFM:NREP 5 GO:PFM GO:0004096|"GO:catalase activity"|PF06628|IPR010582| GO:PFM GO:0005506|"GO:iron ion binding"|PF06628|IPR010582| GO:PFM GO:0006979|"GO:response to oxidative stress"|PF06628|IPR010582| GO:PFM GO:0020037|"GO:heme binding"|PF06628|IPR010582| GO:PFM GO:0055114|"GO:oxidation reduction"|PF06628|IPR010582| RP:SCP:NREP 2 RP:SCP:REP 37->520|1a4eA|e-158|33.5|475/488|e.5.1.1| RP:SCP:REP 575->719|1cf9A1|4e-33|33.8|130/156|c.23.16.3| HM:SCP:REP 12->555|1cf9A2|1e-209|51.4|543/571|e.5.1.1|1/1|Heme-dependent catalase-like| HM:SCP:REP 551->673|1sy7A1|1e-20|31.4|121/0|c.23.16.3|1/1|Class I glutamine amidotransferase-like| OP:NHOMO 1184 OP:NHOMOORG 656 OP:PATTERN ---------------------------------------------11--1-12--------------- ----2112111111243----2--12-----121112263121111221111222321--1--13324431---------1-------111--1-----3-1-1-312-1----------------------------------1------------------------1-------------112-----1-3444443241334344224223433---451211111114211111111111111211111-1--------11----1-----------------------------------------------------1--------11-----------1--1------22-----------------11---------21--2-11111-11111111112-22122121-1--1111--111122-111---12222---1111111112212-22-------------------------------13-1111121332312111111223333113132-21----111222231-5-11-12-211111111111111-2---111-11-1111--------1--1-2111---1-1111111111111111---1--11-2-12-32-11221-1211111121122---1---------11-1-111111111111-1111111111111111111112--1111-111111111111112---11111-111111111111-----11-1-----1-2-1111---11111--111321211221-334323531222332331---------112111111221112132222222-------1--1111------------------------------------------------1 ----221-----2322344443569643333333443222222333676657664523233332212221122112212251114112-5833421534115-424-3-23122111111112122111171-111111111111111111111121351642211421172312111-----1473844431-5233- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 696 STR:RPRED 96.8 SQ:SECSTR #######################HTTTGGGGGccccTTcccccTTccccccTcccccccTTccccTTcHHHHHHHHHHHTcccccccccccEEEEEEEEEEcccHcTTTccccTTccTTcEEEEEEEEEcccccTTccTTcccccEEEEEEEETTEEEEEEEEcccccccccGGGHHHHHHHHcccTTTTccTTccccHHHHHHHHHcGGGHHHHHHHHcGGGcccccTTccEEccccEEEEcTTccEEEEEEEEEEccccccccHHHHHHHHHHcTTHHHHHHHHHHHTTcccEEEEEEEEEcGGGcccccccTTcTTccccTTTcccEEEEEEEEEEccccHHHHTTTccccTTcccTTEEccccHHHHHHHHHHHHHHHHHHccccGGGcTTTcccccccccccccTTccccccccccccccTTccccccccTTcccccTTccccccccccccGGGccccHHHHHHHHTccHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHcHHHHHHHHHHHTcccccccTTcccccccccccccccccccccTTcEEEEccccccHHHHHHHHHHHHHHTTcEEEEEEccccEEccTTccEETTTccGGGccEEEEcTTccTTTcTTTTccTTccTTHHHHHHHHHHHTTccEEEEGGGHHHHHHTTccccccTcccGGGHTTEEEEcEEcccHHHHHHHHHHHHHHcccGGGHHTTccc DISOP:02AL 1-40, 527-539| PSIPRED cccccccccccccccccccccccHHHHHHHHHHccccccEEEcccccccccccccEEEcccccEEHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEccHHHHHccHHHHHHccccEEEEEEEEEccccccccccccccccEEEEEEEcccccEEEEEccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccEEEEEEEEcccccEEEEEEEEEEccccccccHHHHHHHcccccHHHHHHHHHHHHcccccEEEEEEEEcccccHHHccccccccccccccccccEEEEEEEEEccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccEEEEEEcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHcccEEEEEEccccEEEEEcccccEEEEcccHHHccHHHccEEEEccccccHHHHHccHHHHHHHHHHHHHccEEEEcccHHHHHHHccccccccEEEcccccccEEEEcccccccHHHHHHHHHHHHccccccccHHcccc //