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Nocardia farcinica IFM 10152 (nfar0)
Gene : lspA
DDBJ      :lspA         putative signal peptidase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  323/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:240 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   38->174 PF01252 * Peptidase_A8 1e-21 50.4 %
:HMM:PFM   39->178 PF01252 * Peptidase_A8 4.5e-39 41.8 134/150  
:BLT:SWISS 39->189 LSPA_MYCA1 2e-52 64.4 %
:PROS 123->135|PS00855|SPASE_II
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56634.1 GT:GENE lspA GT:PRODUCT putative signal peptidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1949695..1950417) GB:FROM 1949695 GB:TO 1950417 GB:DIRECTION - GB:GENE lspA GB:PRODUCT putative signal peptidase GB:PROTEIN_ID BAD56634.1 LENGTH 240 SQ:AASEQ MPHTPGTEARHGPRSAREMMIGVNDDQRPPLRLRTLLIIAFCLYALDLLTKCLAVALIDPGEPVPVIGDFARLALVRNPGAAFSMATGMTWLLTLIATAVVIGVIRIGRTLRSLWWAIGLGMVLGGALGNLTDRLFRSPGPLQGHVVDFVAVGDFPVFNVADSAIVCGATLLVVATVFGFEPDGTRVGRDDENDDAANEDGTDTDTAGEDGTAPEPDRPSPPPTDSERKGSESKGEENAA GT:EXON 1|1-240:0| BL:SWS:NREP 1 BL:SWS:REP 39->189|LSPA_MYCA1|2e-52|64.4|149/182| PROS 123->135|PS00855|SPASE_II|PDOC00669| TM:NTM 4 TM:REGION 34->56| TM:REGION 83->105| TM:REGION 110->132| TM:REGION 150->172| SEG 28->37|rpplrlrtll| SEG 190->237|ddenddaanedgtdtdtagedgtapepdrpsppptdserkgseskgee| RP:PFM:NREP 1 RP:PFM:REP 38->174|PF01252|1e-21|50.4|131/149|Peptidase_A8| HM:PFM:NREP 1 HM:PFM:REP 39->178|PF01252|4.5e-39|41.8|134/150|Peptidase_A8| GO:PFM:NREP 3 GO:PFM GO:0004190|"GO:aspartic-type endopeptidase activity"|PF01252|IPR001872| GO:PFM GO:0006508|"GO:proteolysis"|PF01252|IPR001872| GO:PFM GO:0016020|"GO:membrane"|PF01252|IPR001872| OP:NHOMO 348 OP:NHOMOORG 323 OP:PATTERN -------------------------------------------------------------------- --1-111111111111111-11111111111111111211111111111111111111--111111111111111111-1-----1-1--------------------1------------------111--1---22211111----1-11-1---1-----1-11111--1-----1------1----1-11----------------1--11-----1-111111211111111111111111111--111-1----1---11----1-----111---1---111------------------------11----1111112--------------111---1-11---------1--111-11-1-1111---------------------------------1-------------1---11111111------------------------------1-----------------------------------1111--1111---------1------1-71112-111-11--1-1--11413----11--1111111-1---11-11----11111-1--11-12--1-1--1---------------------------1111211211--111112121111111111---1--1-------------------------------------------112--111-----------------------------------------------1111-1111---1---11-1----2-1-1------1------------1----1111111111---1----------11111111111111------------------1---------------------------------1----1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-5, 7-27, 180-240| PSIPRED ccccccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccEEEEEEEEEccEEEEccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHcccccccccccccccccccccccccccHHHccHHccccccc //