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Nocardia farcinica IFM 10152 (nfar0)
Gene : lysA
DDBJ      :lysA         putative diaminopimelate decarboxylase
Swiss-Prot:             

Homologs  Archaea  34/68 : Bacteria  789/915 : Eukaryota  35/199 : Viruses  0/175   --->[See Alignment]
b.49.2c.1.6
:473 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   28->471 1hkvA PDBj e-176 66.7 %
:RPS:PDB   56->470 3c5qA PDBj 5e-58 29.9 %
:RPS:SCOP  71->335 1hkvA2  c.1.6.1 * 9e-54 64.2 %
:RPS:SCOP  313->471 1knwA1  b.49.2.3 * 7e-37 30.2 %
:HMM:SCOP  64->334 1twiA2 c.1.6.1 * 1.1e-78 44.7 %
:HMM:SCOP  304->474 1knwA1 b.49.2.3 * 1.3e-48 42.7 %
:RPS:PFM   80->333 PF02784 * Orn_Arg_deC_N 2e-33 45.2 %
:RPS:PFM   317->449 PF00278 * Orn_DAP_Arg_deC 4e-13 33.3 %
:HMM:PFM   71->332 PF02784 * Orn_Arg_deC_N 2.6e-64 36.9 249/251  
:HMM:PFM   354->449 PF00278 * Orn_DAP_Arg_deC 1e-21 25.3 95/116  
:BLT:SWISS 1->472 DCDA_MYCS2 e-179 66.1 %
:PROS 94->112|PS00878|ODR_DC_2_1
:PROS 268->285|PS00879|ODR_DC_2_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55893.1 GT:GENE lysA GT:PRODUCT putative diaminopimelate decarboxylase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1156431..1157852 GB:FROM 1156431 GB:TO 1157852 GB:DIRECTION + GB:GENE lysA GB:PRODUCT putative diaminopimelate decarboxylase GB:PROTEIN_ID BAD55893.1 LENGTH 473 SQ:AASEQ MSAHPAGPRHAESSATPHLAQRPVDPKQMIELPANVWPRNATRDEAGQVRLAGVPVRELAEQFGTPLFVVDEDDFRSRCRDMVRAFGPDARVHYASKAFLCGEIARWLRDEGLSLDVCSGGELAIALHAGFPAERIALHGNNKSVAELEAAVAAGVGHVVVDSLIEIERLEAVAERAGVVQDVLVRVTVGVEAHTHEYISTAHEDQKFGFSIAGGDAMEALARVFEASNLRLVGLHSHIGSQIFEIDGFEIAARRMLGLLRAAIDTFGVERTAQISTLDLGGGLGISYLPEDNPPPLDEFAAKLRAIVAEEAARAGLPEPTIAVEPGRAIAGPGTVTVYEVGTIKDVSLDAGLRRRYVSVDGGMSDNIRPALYQADYDCRLVSRPSEAEAVLARVVGKHCESGDIVIRDTWMPADVGPGDLIAVAATGAYCYSMSSRYNQLTRPAVVAVRDGSARLVLRRETVADLLSLEVES GT:EXON 1|1-473:0| BL:SWS:NREP 1 BL:SWS:REP 1->472|DCDA_MYCS2|e-179|66.1|472/474| PROS 94->112|PS00878|ODR_DC_2_1|PDOC00685| PROS 268->285|PS00879|ODR_DC_2_2|PDOC00685| SEG 145->161|vaeleaavaagvghvvv| SEG 252->263|aarrmlgllraa| BL:PDB:NREP 1 BL:PDB:REP 28->471|1hkvA|e-176|66.7|444/446| RP:PDB:NREP 1 RP:PDB:REP 56->470|3c5qA|5e-58|29.9|388/394| RP:PFM:NREP 2 RP:PFM:REP 80->333|PF02784|2e-33|45.2|241/249|Orn_Arg_deC_N| RP:PFM:REP 317->449|PF00278|4e-13|33.3|132/139|Orn_DAP_Arg_deC| HM:PFM:NREP 2 HM:PFM:REP 71->332|PF02784|2.6e-64|36.9|249/251|Orn_Arg_deC_N| HM:PFM:REP 354->449|PF00278|1e-21|25.3|95/116|Orn_DAP_Arg_deC| GO:PFM:NREP 2 GO:PFM GO:0003824|"GO:catalytic activity"|PF02784|IPR000183| GO:PFM GO:0003824|"GO:catalytic activity"|PF00278|IPR000183| RP:SCP:NREP 2 RP:SCP:REP 71->335|1hkvA2|9e-54|64.2|265/265|c.1.6.1| RP:SCP:REP 313->471|1knwA1|7e-37|30.2|159/174|b.49.2.3| HM:SCP:REP 64->334|1twiA2|1.1e-78|44.7|264/0|c.1.6.1|1/1|PLP-binding barrel| HM:SCP:REP 304->474|1knwA1|1.3e-48|42.7|164/0|b.49.2.3|1/1|Alanine racemase C-terminal domain-like| OP:NHOMO 1086 OP:NHOMOORG 858 OP:PATTERN -----------------1-----11--111111111111111111111112111---1----111--- 1111211111111122211-11111211111111111211111111111111111112--211132133311111111111212121111121112-11111-1121111---------------1111111112111111111111111111111111111111111121111111111111111--1111111111111111111111111111111111111111111111111112122111221111111--1111-1-111111-11111111-------11111111111111-------------111111111111-11111111111131112111111--1211111121111111121--1121111112111111121122112111111111111-2212212133213222222221211211111211111111111111112221231---11111---------------------1221111111111111112221113122221212111221111111211112111112111111111111132322312211112121333122212111111112211111111111111111111111122111112121311122222222112222211211---122111-11111331111111111111-1111111111111111111111111112222222222222222111111111-11111111111111-2-----111111112111111111111111111211222121222233222333223331-1-1111-111111111112122111111112211111111111111--------1-1-------------------------2222212111121 ----231----------------------------------------------------------------------------------------------------2-21-----------------------------------------------1----111-------3111119111112123-211132221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 448 STR:RPRED 94.7 SQ:SECSTR ########################TTEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHTcccEEEEEEGGGcccHHHHHHHHHTTcEEEEccHHHHHHHHHHTccGGGEEEccTTccHHHHHHHHHTTccEEEEccHHHHHHHHHHHHHHTccEEEEEEccccccccccGGGccccTTccccccHHHHHHHHHHHHHHHcTTEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHTTccccEEEccccccccTTcccccccHHHHHHHHHHHTTTGHHccGGcccEEEEcccHHHHTTTEEEEEEEEEEEcccccccccccEEEEcccTTTccHHHHHcccccEEEccccTTccEEEEEEEcccccTTcEEEEEEEEEccccTTcEEEEcccccccGGGcccTTTccccEEEEEEcccEEEEEccccHHHHHGGGET# DISOP:02AL 1-6, 472-473| PSIPRED cccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHccccEEEEcHHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHcccEEEEcHHHHHHHHHccccccEEEEEcccccHHHHHHHHHccccEEEEccHHHHHHHHHHHHHccccEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEccHHHHHccEEEEEEEEEEEEccccccccEEEEEEcccccccccHHHHcccccEEEccccccccEEEEEEEEcccccccEEEEEcccccccccccEEEEEcccHHHHHHHccccccccccEEEEEccEEEEEEEEccHHHHHHHHccc //