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Nocardia farcinica IFM 10152 (nfar0)
Gene : lysS
DDBJ      :lysS         putative lysyl-tRNA synthetase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  817/915 : Eukaryota  197/199 : Viruses  0/175   --->[See Alignment]
b.40.4d.104.1
:488 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->484 3e9hA PDBj 2e-89 40.8 %
:RPS:PDB   14->485 3bjuC PDBj 4e-59 33.0 %
:RPS:SCOP  17->136 1bbuA1  b.40.4.1 * 2e-19 29.4 %
:RPS:SCOP  143->485 1bbuA2  d.104.1.1 * 3e-85 42.4 %
:HMM:SCOP  1->136 1e1oA1 b.40.4.1 * 1.9e-38 39.6 %
:HMM:SCOP  143->485 1bbuA2 d.104.1.1 * 5.8e-99 41.1 %
:RPS:PFM   144->481 PF00152 * tRNA-synt_2 9e-36 34.2 %
:HMM:PFM   143->483 PF00152 * tRNA-synt_2 1.3e-81 33.1 314/323  
:HMM:PFM   51->127 PF01336 * tRNA_anti 1.8e-11 29.6 71/76  
:BLT:SWISS 15->484 SYK_MYCGI 0.0 74.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55253.1 GT:GENE lysS GT:PRODUCT putative lysyl-tRNA synthetase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 429563..431029 GB:FROM 429563 GB:TO 431029 GB:DIRECTION + GB:GENE lysS GB:PRODUCT putative lysyl-tRNA synthetase GB:PROTEIN_ID BAD55253.1 LENGTH 488 SQ:AASEQ MRIRREKRERLLEAGTEAYPVVVPRTHSLAEIRAAHPDLAPDTQTGQQVGVAGRVIFLRNTGKLCFATLQEGDGTKLQAMISLNGVGADALAAWKADVDLGDFVFVHGEVIASRTGELSVMADSWSMAAKSLRPLPVAHKEMNEESRVRQRYVDLIVRPEARQMARTRVAVVRALRNALERRGFLEVETPMLQTLHGGAAARPFVTHSNALDMDLYLRIAPELFLKRCVVGGLEKVFEINRNFRNEGADSTHSPEFAMLETYEAYGTYDDSATMIRELIQEVAQEALGTQVVTLADGTEYDLRGEWATVEMYPSLSAALGEPVTPETTVEELRAIAARVGLEIPEEKGYGHGKLVEELWEHQYGDKLYAPTFVRDFPVETSPLTRQHRSKPGVTEKWDLYVRGFELATGYSELVDPVIQRERFVDQARLAAQGDDEAMVLDEDFLAAMEHGMPPTTGTGMGIDRLLMALTGLGIRETILFPIVRPVAR GT:EXON 1|1-488:0| BL:SWS:NREP 1 BL:SWS:REP 15->484|SYK_MYCGI|0.0|74.9|470/501| SEG 2->13|rirrekrerlle| SEG 161->182|arqmartrvavvralrnalerr| SEG 321->331|epvtpettvee| SEG 451->461|gmppttgtgmg| BL:PDB:NREP 1 BL:PDB:REP 15->484|3e9hA|2e-89|40.8|461/484| RP:PDB:NREP 1 RP:PDB:REP 14->485|3bjuC|4e-59|33.0|470/501| RP:PFM:NREP 1 RP:PFM:REP 144->481|PF00152|9e-36|34.2|325/337|tRNA-synt_2| HM:PFM:NREP 2 HM:PFM:REP 143->483|PF00152|1.3e-81|33.1|314/323|tRNA-synt_2| HM:PFM:REP 51->127|PF01336|1.8e-11|29.6|71/76|tRNA_anti| GO:PFM:NREP 6 GO:PFM GO:0000166|"GO:nucleotide binding"|PF00152|IPR004364| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF00152|IPR004364| GO:PFM GO:0005524|"GO:ATP binding"|PF00152|IPR004364| GO:PFM GO:0005737|"GO:cytoplasm"|PF00152|IPR004364| GO:PFM GO:0006412|"GO:translation"|PF00152|IPR004364| GO:PFM GO:0006418|"GO:tRNA aminoacylation for protein translation"|PF00152|IPR004364| RP:SCP:NREP 2 RP:SCP:REP 17->136|1bbuA1|2e-19|29.4|119/144|b.40.4.1| RP:SCP:REP 143->485|1bbuA2|3e-85|42.4|340/342|d.104.1.1| HM:SCP:REP 1->136|1e1oA1|1.9e-38|39.6|134/143|b.40.4.1|1/1|Nucleic acid-binding proteins| HM:SCP:REP 143->485|1bbuA2|5.8e-99|41.1|341/342|d.104.1.1|1/1|Class II aaRS and biotin synthetases| OP:NHOMO 1855 OP:NHOMOORG 1044 OP:PATTERN ------1111111111-111111------------11-1111111-11--111--------------- 2221212222221122222-232223222222323322321-1111111111222322--11123131--211111112222-21222111111112-112122111111111111122122222111111111111111122211111111111111111111111111111211111212111111--212222222222222222222222222222121211111112221111111111111-21122121122122122222111111111111111111222111111111111111111111111211111111121122222222222221222222321122223122121112222222222112-111-----1-1-1-1--1---------------11111-1--1-2222222222221111----1-------11111111-1111212------------------------1--------1-11111111111111111111111111111111111111111111111121112122111111111111111321312212121112132233332221231322112122222212121112121122112222222112121111212222222222113-1112211122233333334444445444-4444444444444444444444333223333333333333333334333343133333333333311233333322222222323233323333332233333332212122222112222221222111111111222113333322133323232222222221122112211---------1122211-21112111111111211112111122222112 2211222-62211222222222222222212222222222222222222222221222222222222212222223223322222222-12121111111111222132232212241111111231715G214531111212312111111121211111411111231134512322F2221232562252243332 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 475 STR:RPRED 97.3 SQ:SECSTR #############TTcccccccccccccHHHHHHHHTTccTcccccccEEEEEEEEEEEEccTEEEEEEEETTEEEEEEEETTTcccHHHHHHHHTTccTTcEEEEEEEEEEcTTccEEEEEEEEEEEEccccccccccccccHHHHHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHTTcEEcccccEEcccccccccccEEEETTTTEEEEEccccHHHHHHHHHTTccEEEEEEEEEccccccTTcccEEEEEEEEEETccHHHHHHHHHHHHHHHHHHHHcccTTcTTccEEEEcccccEEEEHHHHHHHHHTcccccGGGTTcHHHHHHHHHHTccccccccHHHHHHHHHHHHTGGGccccEEEEcccGGGcTTcccccccTTcccEEEEEETTEEEEEEEEccccHHHHHHHHHHHHHHHHTTcTTcccccHHHHHHHTTTcccEEEEEEEHHHHHHHHTTccGGGcccccccccHHH DISOP:02AL 487-488| PSIPRED cHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccEEEEEEEEEEEEccccEEEEEEEccccEEEEEEEEcccccHHHHHHHHHHccccEEEEEEEEEEEcccccEEEEEEEEEEEEccccccccccccccHHHHHHHHHHHEEEcHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccEEEEccccccccccccccccccccEEEEcHHHHHHHHHHHcccccEEEEEEEEEccccccccccEEccccHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHcHHHcccccccHHHHEEEEEEccEEEEEccEEEccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHEEEcccccccccc //