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Nocardia farcinica IFM 10152 (nfar0)
Gene : murE
DDBJ      :murE         putative UDP-N-acetylmuramoylalanyl-D-glutamate- 2,6-diaminopimelate ligase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  834/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
c.59.1c.72.2c.98.1
:536 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   170->519 1e8cB PDBj 5e-21 37.6 %
:RPS:PDB   54->521 1e8cA PDBj 3e-40 24.4 %
:RPS:SCOP  54->97 1gg4A3  c.98.1.1 * 5e-10 31.8 %
:RPS:SCOP  132->332 1e8cA3  c.72.2.1 * 4e-34 28.8 %
:RPS:SCOP  364->521 1e8cA2  c.59.1.1 * 1e-14 30.8 %
:HMM:SCOP  33->131 1e8cA1 c.98.1.1 * 1.4e-19 40.2 %
:HMM:SCOP  132->362 1e8cA3 c.72.2.1 * 1.1e-69 46.1 %
:HMM:SCOP  362->533 1e8cA2 c.59.1.1 * 1.7e-41 49.4 %
:RPS:PFM   184->332 PF08245 * Mur_ligase_M 1e-07 38.9 %
:HMM:PFM   141->343 PF08245 * Mur_ligase_M 2.5e-46 37.0 184/188  
:HMM:PFM   362->452 PF02875 * Mur_ligase_C 1.4e-21 35.3 85/91  
:HMM:PFM   53->129 PF01225 * Mur_ligase 2.1e-15 39.2 74/76  
:BLT:SWISS 54->518 MURE_MYCTU 4e-88 50.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56607.1 GT:GENE murE GT:PRODUCT putative UDP-N-acetylmuramoylalanyl-D-glutamate- 2,6-diaminopimelate ligase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1915398..1917008 GB:FROM 1915398 GB:TO 1917008 GB:DIRECTION + GB:GENE murE GB:PRODUCT putative UDP-N-acetylmuramoylalanyl-D-glutamate- 2,6-diaminopimelate ligase GB:PROTEIN_ID BAD56607.1 LENGTH 536 SQ:AASEQ MSAEFAPPERSKVPQQSSQPVLRPVDPPSTPLTTVLELTGAHAAAPVPADVVVTGIEQRSGAVQPGDLFAALPGAHAHGARFAHDAVARGAVAVFTDAEGARVLDGLTVPVLVRERPREVLGELSAAVYGQPSQRLRLIGITGTSGKTTTSYLVEAGLAAAGLSTALIGTIETRIGGRRVPSALTTPEAPQLHAMFALMVEQGVQAVVMEVSSHALALGRVDGVRFDVGAFTNLSQDHLDFHADFEDYFAAKRRLFEPQSPVAARTAVVCVDDAWGRRLAEGLAAPITVSTTGEADWRVAGGVATVGAEQEFTAAGPAGELGVRLRLPGRYNVANALLAVAVCAAARADPAVAAPALATVDVPGRMQRVERGQDFLAVVDYAHKPAALESVIATLREHLAAADPEHPGRLAVVVGAGGDRDAGKRALMGAAGARGADLLVITDDNPRTEDPATIRAALRAGALEVPAEVRGEVREIGDRAAAIEAAVAWARRGDAVLVAGKGHETGQEIAGVKHPFDDREVLAAALAGKAGAEART GT:EXON 1|1-536:0| BL:SWS:NREP 1 BL:SWS:REP 54->518|MURE_MYCTU|4e-88|50.7|454/535| SEG 43->53|aaapvpadvvv| SEG 109->124|vpvlvrerprevlgel| SEG 139->151|igitgtsgkttts| SEG 156->169|aglaaaglstalig| SEG 333->363|vanallavavcaaaradpavaapalatvdvp| SEG 408->436|grlavvvgaggdrdagkralmgaagarga| SEG 479->492|raaaieaavawarr| SEG 522->534|laaalagkagaea| BL:PDB:NREP 1 BL:PDB:REP 170->519|1e8cB|5e-21|37.6|319/484| RP:PDB:NREP 1 RP:PDB:REP 54->521|1e8cA|3e-40|24.4|443/482| RP:PFM:NREP 1 RP:PFM:REP 184->332|PF08245|1e-07|38.9|144/187|Mur_ligase_M| HM:PFM:NREP 3 HM:PFM:REP 141->343|PF08245|2.5e-46|37.0|184/188|Mur_ligase_M| HM:PFM:REP 362->452|PF02875|1.4e-21|35.3|85/91|Mur_ligase_C| HM:PFM:REP 53->129|PF01225|2.1e-15|39.2|74/76|Mur_ligase| GO:PFM:NREP 2 GO:PFM GO:0005524|"GO:ATP binding"|PF08245|IPR013221| GO:PFM GO:0009058|"GO:biosynthetic process"|PF08245|IPR013221| RP:SCP:NREP 3 RP:SCP:REP 54->97|1gg4A3|5e-10|31.8|44/98|c.98.1.1| RP:SCP:REP 132->332|1e8cA3|4e-34|28.8|198/234|c.72.2.1| RP:SCP:REP 364->521|1e8cA2|1e-14|30.8|146/160|c.59.1.1| HM:SCP:REP 33->131|1e8cA1|1.4e-19|40.2|97/101|c.98.1.1|1/1|MurE/MurF N-terminal domain| HM:SCP:REP 132->362|1e8cA3|1.1e-69|46.1|228/0|c.72.2.1|1/1|MurD-like peptide ligases, catalytic domain| HM:SCP:REP 362->533|1e8cA2|1.7e-41|49.4|160/0|c.59.1.1|1/1|MurD-like peptide ligases, peptide-binding domain| OP:NHOMO 872 OP:NHOMOORG 839 OP:PATTERN -------------------------------------------------------------------- 1112111111111111111-11111111111111111122111121111111111111111111111112111111111111111111111111111--111111111111111111111111111111111111111111---11111111111111111111111111111111111111111111111211112121221122111211111211111222211111111111111111111111111111--1--12---1111--1111111111111111111111111111111111111111111111111111112322111111111111111111111112111111111123111111-1111-111111111111111111111111111111111-111111111111111111111111112111121111111111111111111111111---------------1-11-11-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111-1------111-1-111111111111111111111111111111111-11111---11111111111111111111-1111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111--11111111111111111111111111111111111111111111111111111111111111111111111111111---------------------------1211111111111 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------2--1-11------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 462 STR:RPRED 86.2 SQ:SECSTR #####################################################cccEccGGGccTTcEEEEcccccccGGGGHHHHHHTTccEEEEEcTTTccTTcEEETTEEEEEETTHHHHHHHHHTTcGGGccEEEEEEccccHHHHHHHHHHHHHHTTccEEEETTTEEEETTcccccccccccHHHHHHHHHHHTHHTTccEEEEccHHHHHTTTTTTccccEEEEcccccccHHHHccHHHHHHHHHHHTccTTcccccEEEEETTcHHHHHHHTTcTTcEEEEccccTTTccEEEEEEccccEEEEEEETTccEEEEEEcccHHHHHHHHHHHHHHHTTccHHHHHHHGGGccccTTcEEEccTTTccEEEEEccccHHHHHHHHHHHHTHHcccccHTccccEEEEEccccccccTHHHHHHHHHHHccEEEEccccccTccHHHHHHHHHTETccGGGcEEccHHHHHH######HHHHHccTTcEEEEEccTTccEEEETTEEEEccHHHH############### DISOP:02AL 1-17, 531-536| PSIPRED cccccccccccccccccccccccccccccccHHHHHHHHcHHHccccccccEEEEEEccHHHcccccEEEEEEcccccccccHHHHHHcccEEEEEcccccccccccccEEEEEEcHHHHHHHHHHHHHHHHHHccEEEEEEcccccHHHHHHHHHHHHHccccEEEEccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEccccccHHcccccccccEEEEEcccHHHHHHcccHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHccccEEEEEEccccEEEEEEEEEEcccEEEEEEEccEEEEEEEccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccEEEEEEccccEEEEEEccccHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHcccccEEEEEccccccHHHHccEEEcccHHHHHHHHHHHHccccccc //