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Nocardia farcinica IFM 10152 (nfar0)
Gene : murF
DDBJ      :murF         putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  759/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
c.59.1c.72.2c.98.1
:499 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->57,162->477 1gg4A PDBj 3e-19 33.9 %
:RPS:PDB   162->475 2am1A PDBj 6e-32 20.5 %
:RPS:SCOP  2->57 1gg4A3  c.98.1.1 * 4e-13 42.3 %
:RPS:SCOP  176->335 1e8cA3  c.72.2.1 * 6e-19 21.2 %
:RPS:SCOP  342->499 1e8cA2  c.59.1.1 * 5e-14 20.1 %
:HMM:SCOP  1->100 1gg4A3 c.98.1.1 * 2e-18 36.5 %
:HMM:SCOP  127->339 1gg4A4 c.72.2.1 * 1.6e-55 40.6 %
:HMM:SCOP  341->488 1gg4A1 c.59.1.1 * 8.5e-34 42.1 %
:RPS:PFM   164->312 PF08245 * Mur_ligase_M 4e-15 39.7 %
:HMM:PFM   133->320 PF08245 * Mur_ligase_M 2.8e-44 36.9 187/188  
:HMM:PFM   342->428 PF02875 * Mur_ligase_C 3.8e-22 45.7 81/91  
:HMM:PFM   33->97 PF01225 * Mur_ligase 2.1e-15 41.0 61/76  
:BLT:SWISS 1->57,162->475 MURF_MYCTU 2e-86 55.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56608.1 GT:GENE murF GT:PRODUCT putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1917178..1918677 GB:FROM 1917178 GB:TO 1918677 GB:DIRECTION + GB:GENE murF GB:PRODUCT putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase GB:PROTEIN_ID BAD56608.1 LENGTH 499 SQ:AASEQ MIEMTLREIADVVGGTLHDAPDPEVRVTGTAEFDSRRIGSGDLFLALPGERADGHDYAAAAVAAGAAAVLAARPVGVPAVVVEPRRCSVPATSMALAHDADGSGAAVLAALAALARASVERLSAAGGLTVVGVTGSSGKTSTKDLLAAVLAPLGPVVAPPGSFNNELGHPWTALRATADTRFLVLEMSARGVGHIAALAEVAPPRIGVVLNVGTAHLGEFGSREAIARAKGELVEALPADGLAILNADDPNVAAMAARTAARVVRVGLSGDADYRASEVRLDEQARATFTLHTPAGSTEIRLGVHGEHQVGNALAAAAVASECGADLATVAAALSGARAVSERRMDVRTTADGVTVVNDSYNANPDSVRAALKALVTMSRAGERPRRSWAVLGEMAELGEESVLEHDGIGRLAVRLDVDRLVVVGTGRPSRAMHQGAVMEGSWGEESVLVPDIDAAVALLDREVEPGDVVLVKASKSVGLWEVAEHLTRRAGSDTEAAQ GT:EXON 1|1-499:0| BL:SWS:NREP 1 BL:SWS:REP 1->57,162->475|MURF_MYCTU|2e-86|55.1|371/510| SEG 58->82|aaaavaagaaavlaarpvgvpavvv| SEG 105->143|aavlaalaalarasverlsaaggltvvgvtgssgktstk| SEG 145->161|llaavlaplgpvvappg| SEG 252->266|vaamaartaarvvrv| SEG 313->320|alaaaava| SEG 414->424|vrldvdrlvvv| BL:PDB:NREP 1 BL:PDB:REP 2->57,162->477|1gg4A|3e-19|33.9|338/430| RP:PDB:NREP 1 RP:PDB:REP 162->475|2am1A|6e-32|20.5|297/442| RP:PFM:NREP 1 RP:PFM:REP 164->312|PF08245|4e-15|39.7|146/187|Mur_ligase_M| HM:PFM:NREP 3 HM:PFM:REP 133->320|PF08245|2.8e-44|36.9|187/188|Mur_ligase_M| HM:PFM:REP 342->428|PF02875|3.8e-22|45.7|81/91|Mur_ligase_C| HM:PFM:REP 33->97|PF01225|2.1e-15|41.0|61/76|Mur_ligase| GO:PFM:NREP 2 GO:PFM GO:0005524|"GO:ATP binding"|PF08245|IPR013221| GO:PFM GO:0009058|"GO:biosynthetic process"|PF08245|IPR013221| RP:SCP:NREP 3 RP:SCP:REP 2->57|1gg4A3|4e-13|42.3|52/98|c.98.1.1| RP:SCP:REP 176->335|1e8cA3|6e-19|21.2|156/234|c.72.2.1| RP:SCP:REP 342->499|1e8cA2|5e-14|20.1|149/160|c.59.1.1| HM:SCP:REP 1->100|1gg4A3|2e-18|36.5|96/98|c.98.1.1|1/1|MurE/MurF N-terminal domain| HM:SCP:REP 127->339|1gg4A4|1.6e-55|40.6|212/214|c.72.2.1|1/1|MurD-like peptide ligases, catalytic domain| HM:SCP:REP 341->488|1gg4A1|8.5e-34|42.1|133/135|c.59.1.1|1/1|MurD-like peptide ligases, peptide-binding domain| OP:NHOMO 832 OP:NHOMOORG 763 OP:PATTERN -------------------------------------------------------------------- 111-211111111111111-111111111111121211111112111111111111111111111111111111111111111---2-11111111---11--1111-1----------------1121111111111122---211111111111111111111111111111111111111--11111-21111111122112111211111121211141111111112211111111111111111111111111111111111111111111111111111111111111111111111111111111111111111113111111111111121111111-12111211222221111122211-1111-111-11111111111111111111111111111-11-11111111111111111111111-1121111--1111111111111111-1111------------11---------1111-11111111111111111----1111-----1111111111111111111111111111111121111111121111-121111-11111--12112113222222112-------------------------2211111-1111111111111111111111111-11221-1----11111111111111111-11111111111111111111111111111111111111111111111111111111111111111--11111111111221121111111111111111111111111111111111121111111111111111111111111111111122222222221111111-111111-------------------------------------1---111111-1 --------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------1------2-----1------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 392 STR:RPRED 78.6 SQ:SECSTR #ccEEHccHHHHHTTTcTTcccccccccccEEccGGGccTTcEEEEcccccccGGGG########################################################################################################TcccTTHHHHHHHTcHTTccEEEEEcccHcTTHHHHHHHHHcccEEEEccccccccTTcccHHHHHHHHGGGcccTTcTTcEEEEEccGGHHHGGGGcccccEEEEEcTTccccEEEEEEcccccEEEEEEETTcccEEEEccccHHHHHHHHHHHHHHHHTTccHHHHHHHGGGccccHcccccEEccTTTcEEEEEccccccHHHHHHHHHHTTccccHHHcccEEEEEEEcccccTTHHHHHHHGGGccTTTccEEEEEEcTTHHHHHHHHccTTcEEEEEccccccTHHHHHHHHHHHccTTEEEEEEccTTccEEEETTH#EEEEccHHHHH# DISOP:02AL 1-2, 492-499| PSIPRED cccccHHHHHHHHccEEcccccccEEEEEEEEEcccccccccEEEEEccccccHHHHHHHHHHcccEEEEEEcccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHcccccEEEEEcccHHHHHHcccHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHccccEEEEEEccccEEEEEEEEEccccEEEEEEEEcccEEEEEEccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccEEEEEEccccEEEEEccccccHHHHHHHHHHHHHHHcccccccEEEEEEEccHHcccHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHcccccEEEEccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHccccccccc //