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Nocardia farcinica IFM 10152 (nfar0)
Gene : nadB
DDBJ      :nadB         putative L-aspartate oxidase
Swiss-Prot:             

Homologs  Archaea  59/68 : Bacteria  788/915 : Eukaryota  186/199 : Viruses  0/175   --->[See Alignment]
a.7.3c.3.1d.168.1
:558 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->60 2nvkX PDBj 6e-06 51.1 %
:BLT:PDB   37->379 1knpA PDBj 3e-75 47.6 %
:RPS:PDB   12->378 2bs2A PDBj 5e-36 26.4 %
:RPS:SCOP  14->232 1e7pA2  c.3.1.4 * 3e-32 28.0 %
:RPS:SCOP  228->371 1d4cA3  d.168.1.1 * 8e-31 26.5 %
:RPS:SCOP  420->531 1nekA1  a.7.3.1 * 2e-08 23.8 %
:HMM:SCOP  1->425 1jnrA2 c.3.1.4 * 4.8e-64 39.5 %
:HMM:SCOP  408->531 2bs2A1 a.7.3.1 * 1.9e-20 32.7 %
:RPS:PFM   14->379 PF00890 * FAD_binding_2 5e-53 49.1 %
:HMM:PFM   14->380 PF00890 * FAD_binding_2 7.2e-84 43.8 356/421  
:HMM:PFM   417->530 PF02910 * Succ_DH_flav_C 1.3e-17 27.9 104/129  
:BLT:SWISS 9->379 NADB_MYCTU e-121 61.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56684.1 GT:GENE nadB GT:PRODUCT putative L-aspartate oxidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2008981..2010657 GB:FROM 2008981 GB:TO 2010657 GB:DIRECTION + GB:GENE nadB GB:PRODUCT putative L-aspartate oxidase GB:PROTEIN_ID BAD56684.1 LENGTH 558 SQ:AASEQ MTAAVTIEWEATADLVVIGGGVAGLTAARTASLRGLRVLALSKGGPTDTATQYAQGGIAVVAPHGDSVESHVRDTVAAGAGLCDEAAVRSIVAGGQAAVAALTDLGAVFDLGRDGQVSRTREGGHSTRRIIHAGGDATGAEVQRALNAAGLPVIFGAAACEVVTGPHGVQGVIAVSENGFGVVHTPSVLLATGGLGQLYALSTNPPGATADGVALALWAGATVADLEFVQFHPTVLYTPGGTGRRPLISEAVRGEGAVLVDATGRSVTAGVHPRGDLAPRDVVSRAIAARMRDLGTDHVYLDARAIEGFTRRFPTITASCLAAGIDPRADLIPVAPAAHYQCGGVVTDTHGRTGVPGLFAAGEVARTGLHGANRLASNSLLEGLVVGERVGAAAAERLELPAEVTEIRPRAMPRVPRAALHQVMTAHASVVRDGDGLAEAAARLERAVLRGMSSRYSQARQSTAESVLPAPELAARRIADLEDGALTLTARVLLLAAAARRESRGCHTRSDHPATDDALRHSIPIRLDPDGHPDLLGTLDVTADLAADPDGPELAAVP GT:EXON 1|1-558:0| BL:SWS:NREP 1 BL:SWS:REP 9->379|NADB_MYCTU|e-121|61.5|371/527| SEG 380->403|lleglvvgervgaaaaerlelpae| SEG 408->419|rpramprvpraa| SEG 433->447|dgdglaeaaarlera| SEG 485->501|altltarvlllaaaarr| BL:PDB:NREP 2 BL:PDB:REP 14->60|2nvkX|6e-06|51.1|47/481| BL:PDB:REP 37->379|1knpA|3e-75|47.6|340/529| RP:PDB:NREP 1 RP:PDB:REP 12->378|2bs2A|5e-36|26.4|363/655| RP:PFM:NREP 1 RP:PFM:REP 14->379|PF00890|5e-53|49.1|352/375|FAD_binding_2| HM:PFM:NREP 2 HM:PFM:REP 14->380|PF00890|7.2e-84|43.8|356/421|FAD_binding_2| HM:PFM:REP 417->530|PF02910|1.3e-17|27.9|104/129|Succ_DH_flav_C| GO:PFM:NREP 2 GO:PFM GO:0009055|"GO:electron carrier activity"|PF00890|IPR003953| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00890|IPR003953| RP:SCP:NREP 3 RP:SCP:REP 14->232|1e7pA2|3e-32|28.0|218/336|c.3.1.4| RP:SCP:REP 228->371|1d4cA3|8e-31|26.5|132/146|d.168.1.1| RP:SCP:REP 420->531|1nekA1|2e-08|23.8|101/138|a.7.3.1| HM:SCP:REP 1->425|1jnrA2|4.8e-64|39.5|309/357|c.3.1.4|1/1|FAD/NAD(P)-binding domain| HM:SCP:REP 408->531|2bs2A1|1.9e-20|32.7|107/0|a.7.3.1|1/1|Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain| OP:NHOMO 2060 OP:NHOMOORG 1033 OP:PATTERN 11-1-12222122222-2112211322332121111111111111111-----111111111111-11 13225121111--133344-43223444444333333343233223222111332313--334233345311111222-2-222222211211122---1-2---21233111-11111111111222323333332222211-4122232222212222111222222231221222211122212212122222222222222222222222222222221222222212211111111111111121111-1-1111-1111111-1-1111-111------------------------------------1---111-232111111111-11111111111111-21123331231133----1-2-122222211111232352322222211111111112-43223334232122232222222224222122212312211111111222-23221121111111111111111111111111112222111113222222222223323222212222232322443222222222333232221332222222222223211223222322231212331111223223252221122221112111111134434113332222222345555264444545546651-12232------33442333333333333-333333333333233333344443332333333333333333332332222213333333333331122222222222222121111111111-11112222222222233323223222223222222222222223333333333333311111111112222113-112222------------------------------------------1---221 11--112-721-11122321111121122111111122221222221111111111111111112211-2111122212213332211-11121152121111423-1112211122111-12-121112F1-3321111111---111111111221113115122411922211223X4333232642323342221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 379 STR:RPRED 67.9 SQ:SECSTR TcccccTTccEEccEEEEcccHHHHHHHHHHHTTTccEEEEccccGGGcGGGGccccEEcGGGTTccHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHTTccccccccEEEEccccccccEEEEcGGGTTcccccccTTcccccEEccEEEEEEEEETTEEEEEEEEETTTccEEEEEccEEEEcccccGGGcccccccTTcccHHHHHHHTTccccEEcTTcEEEEccccTTTccccHccccTHHHHHTcEEEcTTccccHHHHcTTTGGGccHHHHHHTTTccccTTcccEEEEcGGGHHHHHHcHHHHHHHHTccccTTTccEEEccEEEEEccEEEccTTccccccTEEEcGGGEEccccTTcccTTHH################################################################################################################################################################################### DISOP:02AL 1-3| PSIPRED ccccccccccccEEEEEEcccHHHHHHHHHHHHccccEEEEEccccccccHHHccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEccHHHHHHHHHHHHccccEEEEccEEEEEEEEccEEEEEEEEEccEEEEEEEcEEEEEccccHHccccccccccccHHHHHHHHHccccEEcccEEEEEEEEEEccccccccEEEEEEccccccEEEcccccHHHcccccHHccccHHHHHHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccEEcccEEEccccEEcccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHcEEEEEEcccccEEEEEccccccccccccccccHHccc //