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Nocardia farcinica IFM 10152 (nfar0)
Gene : nbtD
DDBJ      :nbtD         putative non-ribosomal peptide synthetase
Swiss-Prot:             

Homologs  Archaea  49/68 : Bacteria  737/915 : Eukaryota  189/199 : Viruses  0/175   --->[See Alignment]
a.28.1c.43.1e.23.1
:1701 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   33->1063 2vsqA PDBj e-100 28.1 %
:BLT:PDB   1149->1575 2vsqA PDBj 2e-20 24.5 %
:BLT:PDB   1591->1650 2vsqA PDBj 6e-04 36.1 %
:RPS:PDB   29->453 2e1tA PDBj 9e-42 8.5 %
:RPS:PDB   471->982 1amuB PDBj 1e-80 33.6 %
:RPS:PDB   990->1063 1dnyA PDBj 1e-14 33.8 %
:RPS:PDB   1119->1537 3b30A PDBj 2e-55 9.0 %
:RPS:PDB   1591->1650 1dnyA PDBj 1e-07 26.2 %
:RPS:SCOP  46->207 1l5aA1  c.43.1.2 * 7e-22 16.7 %
:RPS:SCOP  223->476 1l5aA2  c.43.1.2 * 6e-33 13.5 %
:RPS:SCOP  479->982 1md9A  e.23.1.1 * 3e-76 25.0 %
:RPS:SCOP  990->1063 1dnyA  a.28.1.2 * 1e-20 33.8 %
:RPS:SCOP  1123->1293 1l5aA1  c.43.1.2 * 8e-39 20.1 %
:RPS:SCOP  1309->1566 1l5aA2  c.43.1.2 * 7e-32 14.0 %
:RPS:SCOP  1591->1650 1dnyA  a.28.1.2 * 3e-10 26.2 %
:HMM:SCOP  37->236 1q9jA1 c.43.1.2 * 2.1e-41 40.5 %
:HMM:SCOP  220->476 1l5aA2 c.43.1.2 * 5e-45 33.6 %
:HMM:SCOP  456->1006 1pg4A_ e.23.1.1 * 8.2e-172 39.2 %
:HMM:SCOP  990->1135 1klpA_ a.28.1.1 * 2.6e-20 32.1 %
:HMM:SCOP  1114->1321 1q9jA1 c.43.1.2 * 6.1e-45 41.4 %
:HMM:SCOP  1307->1580 1l5aA2 c.43.1.2 * 1.9e-47 37.4 %
:HMM:SCOP  1585->1659 1dnyA_ a.28.1.2 * 3.8e-13 36.0 %
:RPS:PFM   44->328 PF00668 * Condensation 2e-25 35.8 %
:RPS:PFM   519->905 PF00501 * AMP-binding 7e-40 37.9 %
:RPS:PFM   1012->1061 PF00550 * PP-binding 1e-07 50.0 %
:RPS:PFM   1122->1420 PF00668 * Condensation 1e-41 45.1 %
:HMM:PFM   519->910 PF00501 * AMP-binding 5.7e-116 38.8 387/418  
:HMM:PFM   42->330 PF00668 * Condensation 6.2e-57 30.0 287/301  
:HMM:PFM   1119->1419 PF00668 * Condensation 2e-57 33.8 290/301  
:HMM:PFM   1000->1063 PF00550 * PP-binding 2.5e-16 40.6 64/67  
:HMM:PFM   1595->1657 PF00550 * PP-binding 5.6e-12 30.2 63/67  
:BLT:SWISS 43->1566 DHBF_BACSU 0.0 35.9 %
:BLT:SWISS 1591->1650 GRSA_ANEMI 5e-06 38.3 %
:PROS 1022->1037|PS00012|PHOSPHOPANTETHEINE
:PROS 1617->1632|PS00012|PHOSPHOPANTETHEINE
:PROS 631->642|PS00455|AMP_BINDING
:TM
:REPEAT 2|38->493|1115->1579
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55611.1 GT:GENE nbtD GT:PRODUCT putative non-ribosomal peptide synthetase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 827508..832613 GB:FROM 827508 GB:TO 832613 GB:DIRECTION + GB:GENE nbtD GB:PRODUCT putative non-ribosomal peptide synthetase GB:PROTEIN_ID BAD55611.1 LENGTH 1701 SQ:AASEQ MSDTDAANLSVLERRKLLLQRRLRESGLATAESDAQRAQAGERYPLSPGQRRMWFLQTRDAADTTLNICLAYRLTGALDEQRLREAFGTVVARHDLLRTTYGVDEQGEPYQVFTDDVVLAWQSHDLTDLPEQGRARRVEVLARREFGRPFDLAAETPLRATLVRTGAEEHVLVLVVHHIAFDDESWPVFFAEVNAAYNGAEPGAAPAQFVAAEVLAGPDEPAEADVEYWRASLRPLPEPLELPGSAPSQPSTQAERRTLALPADLMTRVDAFARERSATPFMVLLAAFDALVHRYTAATDFLVSVPVTNRRAATEGLIGYFGNTLLLRAAVRPHDSFTGLVEATRETCLNGFAHQSVGIDRVVREANPERVAGRDGMDQLVRLGFSVRKGSDAFALRGVTAQQLELGAPTAQVPLALAVVLESTGALLELEYQTDVLSAELVEQLLRHYLHLLDSALREPTRRLADLAMLSPEDRAAVLEQSHGELVPAPATTMVALLERAAAQRPGDLALVSDDTELTYDQLHRRANRVARLLIAEGIGTEDIVGLRMTTSVEFVVAMLAVLKSGAAYLPIDPAYPEDRIEYLVEDAEPALVLGPVEFAAAESAAADLPDTAPTDADRVRPLLPGNLAYVIYTSGSTGKPKGVPVPHAAIAEHVESFTAEWGMTAEDRLLQSSSVSFDASLLDLFVTLSLGARLIVPKPDAFRDIAYVADLITRRGVTVLHMVPSMLSTFLLLPEVSEWRALRHVPVGGEALPGEVADKFAGVFDAELRNHYGPTEAVVCSTHMPVEGPQGTGVVPIGVPNRNVYTYVLDEALQLVPAGVVGELYLGGDQLARGYLGRPELTAQRFVADPFTPGARLYRTGDLVRRNHFGELEFVGRADEQVKVRGFRIELGEVEAAVATHPAVGHCVVVVAEDPAVGPMLAAYVVPAADEIAGGEIDLEEVRAHAAAVLPQYMVPSAFAVIPEIPLTVNGKLDKRALPAPTPAVERSFREPATATERRLCAIFGHLFKMERVGADDSFFELGGHSLLAARLVAQIRAEFGIELDVRAIFDTPTAAGLAARLVARFRDEFDIDLDSMDADFDGADTEFVGADIDFVEAEGALPGGSARPPLVAAERPERIPLSYSQLAMWFQYRMEGATVAGNLPFAMRIDGDLDTTALSAALNDIVARHEALRTNFPEHDGVPYQLVHPSLEIELPVLATSEENLDATLDELRGYLFSVETEPLIRPTLLVLGPRTHVLSLLVHHIVADHASLGIFLDDLITAYRARVAGSAPRWAAPAIQYADYALWQRAAFDHEPAGAPSEFARAEIEHWRGVLAGLPDEISVAPDRPRPPVLGKRGEVVTFVVPAAERAALEDLAKQSGVSEFMLYQAAVATLLHTLGGGTDIAVGTPVAARVEPAVGALVGLFANMVVLRNDLAGDPTLRTVIARSRDVVLDAHAHQELPIERLVEALNPPRSRSRNPLFQSMIHFRGADWAPAPTALSESGDTTLTVLPTDFDISFLDLNLSLNVGVDGSLEVRVVVNADLYEPATARSIADALRATLAAFAADPDRKVSELRVLPPQELERLLAPPAPRDTAGAGAVSGGSAETERTLIQLLEELLDITDVEPEDNFFALGGDSVISIQWSARAAALGLALTPQLVFEHMTIAELAAAVDAAGPVDAQAESTAAPQPESAPMSASGLDSDALAALTASWQAQS GT:EXON 1|1-1701:0| BL:SWS:NREP 2 BL:SWS:REP 43->1566|DHBF_BACSU|0.0|35.9|1464/2378| BL:SWS:REP 1591->1650|GRSA_ANEMI|5e-06|38.3|60/1098| PROS 1022->1037|PS00012|PHOSPHOPANTETHEINE|PDOC00012| PROS 1617->1632|PS00012|PHOSPHOPANTETHEINE|PDOC00012| PROS 631->642|PS00455|AMP_BINDING|PDOC00427| TM:NTM 3 TM:REGION 409->431| TM:REGION 549->571| TM:REGION 717->739| NREPEAT 1 REPEAT 2|38->493|1115->1579| SEG 12->24|lerrklllqrrlr| SEG 134->145|rarrvevlarre| SEG 170->178|hvlvlvvhh| SEG 230->247|raslrplpeplelpgsap| SEG 600->618|aaaesaaadlpdtaptdad| SEG 1538->1551|adalratlaafaad| SEG 1580->1590|agagavsggsa| SEG 1651->1667|aelaaavdaagpvdaqa| SEG 1681->1696|sasgldsdalaaltas| BL:PDB:NREP 3 BL:PDB:REP 33->1063|2vsqA|e-100|28.1|1012/1273| BL:PDB:REP 1149->1575|2vsqA|2e-20|24.5|401/1273| BL:PDB:REP 1591->1650|2vsqA|6e-04|36.1|60/1273| RP:PDB:NREP 5 RP:PDB:REP 29->453|2e1tA|9e-42|8.5|410/440| RP:PDB:REP 471->982|1amuB|1e-80|33.6|500/508| RP:PDB:REP 990->1063|1dnyA|1e-14|33.8|74/76| RP:PDB:REP 1119->1537|3b30A|2e-55|9.0|402/446| RP:PDB:REP 1591->1650|1dnyA|1e-07|26.2|60/76| RP:PFM:NREP 4 RP:PFM:REP 44->328|PF00668|2e-25|35.8|282/297|Condensation| RP:PFM:REP 519->905|PF00501|7e-40|37.9|375/405|AMP-binding| RP:PFM:REP 1012->1061|PF00550|1e-07|50.0|50/67|PP-binding| RP:PFM:REP 1122->1420|PF00668|1e-41|45.1|288/297|Condensation| HM:PFM:NREP 5 HM:PFM:REP 519->910|PF00501|5.7e-116|38.8|387/418|AMP-binding| HM:PFM:REP 42->330|PF00668|6.2e-57|30.0|287/301|Condensation| HM:PFM:REP 1119->1419|PF00668|2e-57|33.8|290/301|Condensation| HM:PFM:REP 1000->1063|PF00550|2.5e-16|40.6|64/67|PP-binding| HM:PFM:REP 1595->1657|PF00550|5.6e-12|30.2|63/67|PP-binding| GO:PFM:NREP 3 GO:PFM GO:0003824|"GO:catalytic activity"|PF00501|IPR000873| GO:PFM GO:0008152|"GO:metabolic process"|PF00501|IPR000873| GO:PFM GO:0048037|"GO:cofactor binding"|PF00550|IPR006163| RP:SCP:NREP 7 RP:SCP:REP 46->207|1l5aA1|7e-22|16.7|155/174|c.43.1.2| RP:SCP:REP 223->476|1l5aA2|6e-33|13.5|244/250|c.43.1.2| RP:SCP:REP 479->982|1md9A|3e-76|25.0|484/536|e.23.1.1| RP:SCP:REP 990->1063|1dnyA|1e-20|33.8|74/76|a.28.1.2| RP:SCP:REP 1123->1293|1l5aA1|8e-39|20.1|169/174|c.43.1.2| RP:SCP:REP 1309->1566|1l5aA2|7e-32|14.0|244/250|c.43.1.2| RP:SCP:REP 1591->1650|1dnyA|3e-10|26.2|60/76|a.28.1.2| HM:SCP:REP 37->236|1q9jA1|2.1e-41|40.5|168/175|c.43.1.2|1/2|CoA-dependent acyltransferases| HM:SCP:REP 220->476|1l5aA2|5e-45|33.6|247/0|c.43.1.2|1/2|CoA-dependent acyltransferases| HM:SCP:REP 456->1006|1pg4A_|8.2e-172|39.2|541/643|e.23.1.1|1/1|Acetyl-CoA synthetase-like| HM:SCP:REP 990->1135|1klpA_|2.6e-20|32.1|112/115|a.28.1.1|1/2|ACP-like| HM:SCP:REP 1114->1321|1q9jA1|6.1e-45|41.4|174/175|c.43.1.2|2/2|CoA-dependent acyltransferases| HM:SCP:REP 1307->1580|1l5aA2|1.9e-47|37.4|246/0|c.43.1.2|2/2|CoA-dependent acyltransferases| HM:SCP:REP 1585->1659|1dnyA_|3.8e-13|36.0|75/76|a.28.1.2|2/2|ACP-like| OP:NHOMO 8519 OP:NHOMOORG 975 OP:PATTERN 22----5ACBCDDCB51142442E73331156312---323217466853433--------241---- 3495d753223C5AXlWJJ-IY66niJJJJJObZcZdt**1UBU4114294-B5C77B--VXE2kFgaIf8--------387D113114422-2--1---18--1H-1121-------------112-121-12-1AAACC--1j889B1EEE--1111121-1-15JAa2-------2----65555--3D7NAABABFAEABECDGA57DDGJAAH8GADA44233333W42555555555555554333421212212121131122111232211111113116411111111111111111111111111112211121---62222622122K288------61-71151EC5252--B31111---613B55B-----79RLZ436VQRLJ23332232334-A9DBAG8BAKD-9BBF68866BB9BI6558BH465579E2222222281--3963------------1111111111111-----6CU8-5JHAGGLNPOOPHKKECCHQYZZYDUREWUZcR12CCD6AD86N7EFQK125--11A22222222225C772cE65557694444-4854624465665cJ7722221222322-1--------2215--581437514334333395433335353366--12742------D5LB644566C5DC854-5675668577687555555648BARV4645566666665655694546654--476767544464---313131555447R2B111121-111-111199AD938577E4LOHMTOKK9GEGE7IIP3333333331222A566665215544534332221111--1-1122----------1-------------------------------------1A1 ----764-511-78DPQTFYSeTilfrIIJIGISRQRMHLNMMFHHMCJfUVRRKEUOGADC52343333342224322343322233-9J7Q9A5432343CBA8-4E8J39365A6122383IA393N*C1BCJ46329439334511B3-D5776D5568SAH7ABFKAGCB11-7j43475IFEZUII34A784C ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 1608 STR:RPRED 94.5 SQ:SECSTR ###########################TTccEEEEEccccccTTcEEEcTTccEEEccccHHHHHHHHTTcccTTTHHHHHHHHHTcccHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHcccccccGGGccccTTcHHHHHHHHHHHHHHHHHccEEEEcTEEEEEEEEETTTccHHHHHHHHHHHHHHHHTccccHHHHHHTTcccTTcccccTccccGGGTTccccTTcccccccEEEEEEcHHHHHHHHHHHHTTccTTcccccHHHHHHHHHHHHHHHHHTTTccTTcEEEEEEEEEcHHHTccTTHHHHHHHHTcTHHTccccHHHHHHHHHHHHHHHHHHHHHTTTTTTcccEEEEEcTTccEEEHHHHEEHHHHHHTTcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHcEEEEEcccGGGTGGGcccEEEccHHHHHHHTTcGGGHccHHHHHHHHTTcccccccTTccHHHHHHHHHHHcTTcEEEEETTEEEEHHHHHHHHHHHHHHHHHHTccTTcEEEEEccccHHHHHHHHHHHHTTcEEEEccTTccHHHHHHHHHHHcccEEEEcGGGGGGGccccccEEEEcccccGGGccccccccTTcEEEEEEccccEEEEEHHHHHHHHHHHHHTccccTTcEEEEcccTTcTHHHHHHHHHHTTTcEEEEccHHHHTcHHHHHHHHHHTTccEEEEcHHHHTTcHTcTcTTTcccccEEEEEcccccHHHHHHHTTTcEcEEEEEEccGGGccccEEEEcccccccccccccEEcTTEEEEEEcTTcccccTTccEEEEEEETTcccEETTcHHHHHHHEEEccccTTcEEEEEEEEEEEcTTccEEEEEEGGGEEEETTEEEEHHHHHHHHHTcTTEEEEEEEEEEcTTccEEEEEEEEEcccccccHHccHHHHHHHHHHHccGGGcccEEEEcccccccTTccccGGGccccEEEEEEEEEEcGGGHHHHHcGGGHHHHHHHHHccEEEEEEcccHHTccccccccccccccGGGGGGcTTccHHHHHHHTTTEEccccccccEETTTccGGGTHHHHHHTTTccTTTcGGGcEEEEEEcccTTccccccEEccGGGGcHHHHTcEEEEEEEEEEEcccGGGHHHHHHHHHHHHHHHHHHcGGGGcEEEEEcccEEEEEccccccEEEEEEcTGGccHHHHcccccccccTTccTTcccccEEEEcTEEEEEEEEETTTccHHHHHHHHHHHHHHHHTccccHHHcccHHHHTTcccTTcccccccHHccEEEccTTccccGGGTTccccTTcccccccEEEEEEEEcHHHHHHHHHHHHTTccTTcccccHHHHHHHHHHHHHHHHHTTTccTTcEEEEEEEEEcHHHHTccTTcccccEEEEEEEEEHHHccHHHHHHHHHTTccHHHHHHHHHHHHHHHHccccTTccTTTTccTTTcEEEEEcTTccGGccTTcccccccEEEcccccccTTEEEEccccTccEEEEEEEEHHHHHHHHHcHHTccEEEEEEEEEccccccccGGGGcccGGGccEEEccc###############HHHHHHHHHHHHHHcccccccccccccHHHHHTcccccccccccccGGGGGGcTTccHHH################################################### DISOP:02AL 21-40, 986-990, 1699-1701| PSIPRED cccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEEEEEEccccHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEcccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHcEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccEEEEEEEccccccccccccccEEEEEEcccccccccEEEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccHHHHHHHHccccccccccccHHHHHHHHHHcccccEEEEccccEEcHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHHccEEEEccccccHHHHHHHHHHcccEEEEEccHHHcHHHHHccccccccccccccccccccccEEEEEcccccccccEEEEcHHHHHHHHHHHHHHcccccccEEEEEHHHHHHHHHHHHHHHHHHccEEEEEcccccccHHHHHHHHHHccccEEEEcHHHHHHHHHccccccccccEEEEEccccccHHHHHHHHHHcccEEEEccccccHHHEEEEcccccccccccccccccccccEEEEEcccccccccccEEEEEEcccHHHHHccccHHHHHHHHccccccccccEEEEccEEEEccccEEEEEEccccEEEEccEEEcHHHHHHHHHHcccccEEEEEEEEccccccEEEEEEEccccccccccccHHHHHHHHHHHccccccccEEEEEccccccccccccHHHHccHHHHHcccccccccHHHHHHHHHHHHHHccccccccccHHHHcccHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEcccEEEEEEEccccccEEEEcccHHHHHHHHHHHHHccccccccccEEEEEEEEccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHcEEEEEEEEcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccEEEEEEEEEEcccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccHHHHcccccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHccHHHHHHHHHHHHHcc //