[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : nuoC
DDBJ      :nuoC         putative NADH dehydrogenase I chain C
Swiss-Prot:NUOC_NOCFA   RecName: Full=NADH-quinone oxidoreductase subunit C;         EC=1.6.99.5;AltName: Full=NADH dehydrogenase I subunit C;AltName: Full=NDH-1 subunit C;

Homologs  Archaea  34/68 : Bacteria  576/915 : Eukaryota  149/199 : Viruses  0/175   --->[See Alignment]
d.307.1
:253 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   137->251 3i9v5 PDBj 2e-20 39.1 %
:RPS:PDB   56->250 2c6zA PDBj 9e-18 10.6 %
:RPS:SCOP  95->251 2fug51  d.307.1.1 * 6e-34 33.6 %
:HMM:SCOP  85->252 2fug51 d.307.1.1 * 2.1e-42 41.2 %
:RPS:PFM   120->227 PF00329 * Complex1_30kDa 3e-20 46.6 %
:HMM:PFM   121->227 PF00329 * Complex1_30kDa 8.7e-33 39.2 102/103  
:BLT:SWISS 1->253 NUOC_NOCFA e-137 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57512.1 GT:GENE nuoC GT:PRODUCT putative NADH dehydrogenase I chain C GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2834751..2835512) GB:FROM 2834751 GB:TO 2835512 GB:DIRECTION - GB:GENE nuoC GB:PRODUCT putative NADH dehydrogenase I chain C GB:PROTEIN_ID BAD57512.1 LENGTH 253 SQ:AASEQ MSPDTPRGGDLHPPEPDAAATAGPEGTPPDTEPAAEVIGVRHGMFGIRGTGDTSGYGRLVRPVTLPGGTAPPYGGWFDEVVDRLRTALENSGTPFGSALEKIVVFRGELTLHVRREHLVTVARLLRDDPALRFELCLGVNGVHYPDDAGRELHAVYPLRSITHNRLLRVETCAPDTDPHIPSLFEVYPTTDWHERETYDFFGILFDGHPSLTRITMPDDWRGHPQRKDYPLGGIPVEYKGARIPPPDERRAYS GT:EXON 1|1-253:0| SW:ID NUOC_NOCFA SW:DE RecName: Full=NADH-quinone oxidoreductase subunit C; EC=1.6.99.5;AltName: Full=NADH dehydrogenase I subunit C;AltName: Full=NDH-1 subunit C; SW:GN Name=nuoC; OrderedLocusNames=NFA_26650; SW:KW Cell membrane; Complete proteome; Membrane; NAD; Oxidoreductase;Quinone; Transport. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->253|NUOC_NOCFA|e-137|100.0|253/253| GO:SWS:NREP 6 GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0016491|"GO:oxidoreductase activity"|Oxidoreductase| GO:SWS GO:0055114|"GO:oxidation reduction"|Oxidoreductase| GO:SWS GO:0048038|"GO:quinone binding"|Quinone| GO:SWS GO:0006810|"GO:transport"|Transport| SEG 13->36|ppepdaaatagpegtppdtepaae| BL:PDB:NREP 1 BL:PDB:REP 137->251|3i9v5|2e-20|39.1|115/196| RP:PDB:NREP 1 RP:PDB:REP 56->250|2c6zA|9e-18|10.6|179/273| RP:PFM:NREP 1 RP:PFM:REP 120->227|PF00329|3e-20|46.6|103/103|Complex1_30kDa| HM:PFM:NREP 1 HM:PFM:REP 121->227|PF00329|8.7e-33|39.2|102/103|Complex1_30kDa| GO:PFM:NREP 2 GO:PFM GO:0008137|"GO:NADH dehydrogenase (ubiquinone) activity"|PF00329|IPR001268| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00329|IPR001268| RP:SCP:NREP 1 RP:SCP:REP 95->251|2fug51|6e-34|33.6|149/191|d.307.1.1| HM:SCP:REP 85->252|2fug51|2.1e-42|41.2|165/0|d.307.1.1|1/1|Nqo5-like| OP:NHOMO 849 OP:NHOMOORG 759 OP:PATTERN --1-111111111111--------21121211-----------------1111----2121111--11 22212---------11111-11--11111111111111111111-1--1-----------21112112221-----------12222211111---1--1-11--22211--------------1111111111212222211121111111111111111111112111111111111111111111----1-111111111111111------111111----------1-----------------------------------------------------------------------------------------------1-----------------------2--1-1111----11-------12-111111111111111112222211111111111-11111111111111112221212211111111111111111111111222-11121121111111111111111111111111111111-11111111111111111111111111111111111111111111-111111111111111111111121111---1---12---1-222122213222212-11122111111111111111111-1111111---------------------1----11--211111111111111111111111111-1111111111111111111111111111111111111111111111111111-11111111111111111111111111--1----------------11111111111-1111111111111-1111111111111--------------11111111111111111-111111----------------------------------------------121 ------1-----21111111111111111111111111111111111111111111111111111----1--111------11111---12111111111111111-12-23211111111-1-11121141-2211111111111111111-1112111221211111--2211111--------1131-3------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 195 STR:RPRED 77.1 SQ:SECSTR #######################################################TTcccEEEEcccTTHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHTTTccEEEEEcccTTcTTTTcGGG#GEEEETTEEEEcccccGGGTTHHHHEEEEHHHHHHHTTcEEEEcccTccccccTccccGGGEEEcccEEEEEEcccHHHHHHHHHHcTTcEEEEEEccccccGGGcEEETTEEEEEccHHHHc## DISOP:02AL 1-34, 66-67| PSIPRED ccccccccccccccccHHHHccccccccccccccccEEEHHHcEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccEEEEEEcHHHHHHHHHHHHHHHcccccEEEEEEEEccccccccEEEEEEEEEEcccccEEEEEEEEcccccccccHHHHHcccccHHHHHHHHHcEEEcccccccccccccccccccccccccccccHHHEEEccccHHHcEEEcc //