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Nocardia farcinica IFM 10152 (nfar0)
Gene : nuoD
DDBJ      :nuoD         putative NADH dehydrogenase I chain D
Swiss-Prot:NUOD_NOCFA   RecName: Full=NADH-quinone oxidoreductase subunit D;         EC=1.6.99.5;AltName: Full=NADH dehydrogenase I subunit D;AltName: Full=NDH-1 subunit D;

Homologs  Archaea  67/68 : Bacteria  603/915 : Eukaryota  151/199 : Viruses  0/175   --->[See Alignment]
e.18.1
:453 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   65->453 3iam4 PDBj 6e-93 46.4 %
:RPS:PDB   45->429 3curH PDBj 7e-84 14.8 %
:RPS:SCOP  61->453 2fug41  e.18.1.2 * e-104 48.1 %
:HMM:SCOP  61->453 2fug41 e.18.1.2 * 2.1e-121 43.2 %
:RPS:PFM   167->453 PF00346 * Complex1_49kDa 2e-83 57.9 %
:HMM:PFM   168->453 PF00346 * Complex1_49kDa 7.6e-91 48.9 270/272  
:BLT:SWISS 1->453 NUOD_NOCFA 0.0 100.0 %
:PROS 88->99|PS00535|COMPLEX1_49K
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57511.1 GT:GENE nuoD GT:PRODUCT putative NADH dehydrogenase I chain D GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2833390..2834751) GB:FROM 2833390 GB:TO 2834751 GB:DIRECTION - GB:GENE nuoD GB:PRODUCT putative NADH dehydrogenase I chain D GB:PROTEIN_ID BAD57511.1 LENGTH 453 SQ:AASEQ MKDTETRPGRHRAPEPAHPEQPDTTGDTVVTVSGQDWDTVTETLGGAREERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRTWMQGVTFVTRMDYLSPFYNETAYCLGVERLLGITEQIPERASIVRVLLMELNRISSHLVCLATGGMELGALTPMLFGFRERELILDVFETITGLRMNHAYIRPGGLAQDLPDDGVAKVRELLDLMPKRLRDMEHLLTQNPIFKARTQDIGYLDLTGCMALGITGPVLRSAGLPHDLRKSQPYCGYETYEFDVPTTTGCDCYGRYLIRVEEMKESLKIVEQCLDRLRPGPVMIEDKKLAWPADLKLGADGLGNSPAHIGRIMGSSMEGLIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAMCEGGMVADVIAAVASIDPVMGGVDR GT:EXON 1|1-453:0| SW:ID NUOD_NOCFA SW:DE RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5;AltName: Full=NADH dehydrogenase I subunit D;AltName: Full=NDH-1 subunit D; SW:GN Name=nuoD; OrderedLocusNames=NFA_26640; SW:KW Cell membrane; Complete proteome; Membrane; NAD; Oxidoreductase;Quinone; Transport. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->453|NUOD_NOCFA|0.0|100.0|453/453| GO:SWS:NREP 6 GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0016491|"GO:oxidoreductase activity"|Oxidoreductase| GO:SWS GO:0055114|"GO:oxidation reduction"|Oxidoreductase| GO:SWS GO:0048038|"GO:quinone binding"|Quinone| GO:SWS GO:0006810|"GO:transport"|Transport| PROS 88->99|PS00535|COMPLEX1_49K|PDOC00521| SEG 23->32|dttgdtvvtv| SEG 434->447|vadviaavasidpv| BL:PDB:NREP 1 BL:PDB:REP 65->453|3iam4|6e-93|46.4|371/378| RP:PDB:NREP 1 RP:PDB:REP 45->429|3curH|7e-84|14.8|358/545| RP:PFM:NREP 1 RP:PFM:REP 167->453|PF00346|2e-83|57.9|254/254|Complex1_49kDa| HM:PFM:NREP 1 HM:PFM:REP 168->453|PF00346|7.6e-91|48.9|270/272|Complex1_49kDa| GO:PFM:NREP 4 GO:PFM GO:0016651|"GO:oxidoreductase activity, acting on NADH or NADPH"|PF00346|IPR001135| GO:PFM GO:0048038|"GO:quinone binding"|PF00346|IPR001135| GO:PFM GO:0051287|"GO:NAD or NADH binding"|PF00346|IPR001135| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00346|IPR001135| RP:SCP:NREP 1 RP:SCP:REP 61->453|2fug41|e-104|48.1|370/370|e.18.1.2| HM:SCP:REP 61->453|2fug41|2.1e-121|43.2|375/0|e.18.1.2|1/1|HydB/Nqo4-like| OP:NHOMO 1165 OP:NHOMOORG 821 OP:PATTERN 11313121111111113122222121121311212223222222122411223132242531111-11 22213---------11111-11--11111111111111112111-1--1-----------22122112221--------21112222311111---1--1-11--22211--------------1111111111213333333321111111111111111111112111111111111111111111--1-1-111111111111111------111111----------1-------------------------------------------------------------------------------------------1---1----------2-------1-1--2--112221----22--211--23-111111111312112112533311111111111-11111111111111112222212222111111222211111111111322-12231111111111111111111111111111111111-111111111111111111121111111111111111111111111231111111111111111111121111-1-2---342223-433243418333313-2122211111111111111111232222221---------------------1----11--211111111122222213332322233-3333322333323333333222211122222222222222222233332231-21111111111111111111111112--1-----1----------11111111111-1111111111111-1111111111111--------------12111111111111112-111111------------------------------------121111-11-241 ------1-----11111111111111111111111111111111111111111111111111111----1--111------11111---12111241111111112-11-222112-1111111221212B1-1121111111111111-111111-111211114222121231111--------2111-2------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 401 STR:RPRED 88.5 SQ:SECSTR ############################################cccccccEEEEEcccccHccccEEEEEEEETTEEEEEEETEEcccccHHHHHTTccGGGHHHHHHTTccTTTTHHHHHHHHHHHHHTTcc#cccHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTccTGGGGHHHHHHHHHHHHHHTcccGGGTTcTTTTccTTccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEETTTEEccGGGGcHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTGGGGGccccccEEEccEEEcccccHHHHHHHEEEccEEEcTTcTTccccccGGHH#######HHHHHHHGGGEEEEcTTccccTTcTTccGGcccGGcccccccccTTcTTccccccEEEETTccccccHHHHHHHHHcccHcTHHHHHHHTTcccHHHHHc DISOP:02AL 1-2| PSIPRED ccccccccccccccccccccccccccccccccccccccccHHccccccccEEEEEcccccccccccEEEEEEEcccEEEEEEEEEEEcccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHccccccccEEcccccccccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccEEEEEEEEcccccEEEEEEEccccHHHHHHHHHHccccccHHHHHHHHHccccccccc //