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Nocardia farcinica IFM 10152 (nfar0)
Gene : nuoF
DDBJ      :nuoF         putative NADH dehydrogenase I chain F
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  547/915 : Eukaryota  169/199 : Viruses  0/175   --->[See Alignment]
a.29.12c.142.1d.15.13
:441 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->419 3i9v1 PDBj e-113 52.5 %
:RPS:SCOP  2->243 2fug12  c.142.1.1 * 7e-85 54.4 %
:RPS:SCOP  246->327 2fug13  d.15.13.1 * 3e-20 45.7 %
:RPS:SCOP  329->418 2fug11  a.29.12.1 * 2e-16 45.6 %
:HMM:SCOP  1->244 2fug12 c.142.1.1 * 4.1e-82 49.0 %
:HMM:SCOP  245->327 2fug13 d.15.13.1 * 8e-22 48.8 %
:HMM:SCOP  328->431 2fug11 a.29.12.1 * 6.2e-38 53.8 %
:RPS:PFM   47->223 PF01512 * Complex1_51K 8e-52 61.5 %
:RPS:PFM   334->373 PF10589 * NADH_4Fe-4S 4e-13 72.5 %
:HMM:PFM   47->223 PF01512 * Complex1_51K 5.1e-47 49.3 150/151  
:HMM:PFM   332->377 PF10589 * NADH_4Fe-4S 4.6e-24 54.3 46/46  
:HMM:PFM   247->292 PF10531 * SLBB 6.2e-10 43.5 46/59  
:BLT:SWISS 4->438 NUOF_STRCO 0.0 77.9 %
:PROS 171->186|PS00644|COMPLEX1_51K_1
:PROS 345->356|PS00645|COMPLEX1_51K_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57509.1 GT:GENE nuoF GT:PRODUCT putative NADH dehydrogenase I chain F GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2831334..2832659) GB:FROM 2831334 GB:TO 2832659 GB:DIRECTION - GB:GENE nuoF GB:PRODUCT putative NADH dehydrogenase I chain F GB:PROTEIN_ID BAD57509.1 LENGTH 441 SQ:AASEQ MTALAPVLTRYWDDPQSWTLDTYRRHDGYEGLRIALGMEPDQVIQTVKDAGLRGRGGAGFPTGMKWGFIPQGPGPDGTVKPHYLVVNADESEPGTCKDIPLLMATPHALVEGAIIASYAIRANTAFIYLRGEVVPVLRRLRAAVDQAYAAGLLGRDILGSGFDLELIVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPPILRYGTDWFRSMGSEKSPGFTIYSLSGHVTRPGQYEAPLGITLRELLDYADGVRAGHRLKFWTPGGSSTPLFTDEHLDVPLDYEGVAAAGSMLGTKALQIFDETTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLVQLLRRIETGGGTEADLDTLLDITDSINGKSFCALGDGAASPIVSSVKYFRDEYLAHMRGDGCPFDPARSTAWAEAGEGVR GT:EXON 1|1-441:0| BL:SWS:NREP 1 BL:SWS:REP 4->438|NUOF_STRCO|0.0|77.9|430/449| PROS 171->186|PS00644|COMPLEX1_51K_1|PDOC00555| PROS 345->356|PS00645|COMPLEX1_51K_2|PDOC00555| SEG 133->144|vvpvlrrlraav| SEG 376->385|dldtllditd| BL:PDB:NREP 1 BL:PDB:REP 17->419|3i9v1|e-113|52.5|396/437| RP:PFM:NREP 2 RP:PFM:REP 47->223|PF01512|8e-52|61.5|161/162|Complex1_51K| RP:PFM:REP 334->373|PF10589|4e-13|72.5|40/46|NADH_4Fe-4S| HM:PFM:NREP 3 HM:PFM:REP 47->223|PF01512|5.1e-47|49.3|150/151|Complex1_51K| HM:PFM:REP 332->377|PF10589|4.6e-24|54.3|46/46|NADH_4Fe-4S| HM:PFM:REP 247->292|PF10531|6.2e-10|43.5|46/59|SLBB| GO:PFM:NREP 4 GO:PFM GO:0010181|"GO:FMN binding"|PF01512|IPR011538| GO:PFM GO:0016651|"GO:oxidoreductase activity, acting on NADH or NADPH"|PF01512|IPR011538| GO:PFM GO:0051287|"GO:NAD or NADH binding"|PF01512|IPR011538| GO:PFM GO:0051539|"GO:4 iron, 4 sulfur cluster binding"|PF01512|IPR011538| RP:SCP:NREP 3 RP:SCP:REP 2->243|2fug12|7e-85|54.4|237/243|c.142.1.1| RP:SCP:REP 246->327|2fug13|3e-20|45.7|81/84|d.15.13.1| RP:SCP:REP 329->418|2fug11|2e-16|45.6|90/105|a.29.12.1| HM:SCP:REP 1->244|2fug12|4.1e-82|49.0|239/0|c.142.1.1|1/1|Nqo1 FMN-binding domain-like| HM:SCP:REP 245->327|2fug13|8e-22|48.8|82/0|d.15.13.1|1/1|Nqo1 middle domain-like| HM:SCP:REP 328->431|2fug11|6.2e-38|53.8|104/0|a.29.12.1|1/1|Nqo1C-terminal domain-like| OP:NHOMO 1090 OP:NHOMOORG 724 OP:PATTERN ------------------------1---11----1---------1--1----------1-1------- 11222---------12211-12--23111111322211111221-1--1-----1-----11211123411----------1-11112--1--1-----1-11--21111--------------1-----1---1-22222333111111111--11------11--11--------------11111331--------------------------------------------------------------1---------------------------------------------------------------------144-211111111112111----2-2113--23113436331211121--3--111111111233221133333311111111111-33333433221122223332223333112222333322311111111322-23111111111111111111111111111111121221-22112222222222222222222222223344412331331222223323321222121111111113232131-2-1--3-----343243285111111641--1---------------------11112---2---1-------------1----21--221111111111111111111111111-1111111111111111111111111111111111111111111111111111-11111111111111111111111114-121---------------11111111111-1111221122222-1111111111111--------------111111111111111112111111------------------------------------3223333333221 ----111-211-11111111111111111121111111121111111111111111111111111----1--211------1111111-12111111111111112-1-1115221-111-111111113B1-112--1111111-111-11-11-11111111111411311111111H1112131341111131111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 396 STR:RPRED 89.8 SQ:SECSTR ################TTcHHHHHHTTcTHHHHHHHcccHHHHHHHHHTTTcccTTTTcccHHHHHTTcccccc#####cccEEEEEcccccTTcccHHHHHHHcHHHHHHHHHHHHHHHTccEEEEEEcTTcHHHHHHHHHHHHHHHHTTcccTTGGGcccccEEEEEEccccGGGGcHHHHHHHHTTcccccccccccTTTccGGGccEEEEEHHHHHTHHHHHHccHHHHHTccccccccEEEEEEEccccccEEEEEETTccHHHHHTTTcccc##ccEEEEEcccccccEccHHHHTccccTTTTGGGcccccccEEEEEETTccHHHHHHHHHHHHHHHcccccHHHHTTTTHHHHHHHHHTTTcccHHHHHHHHHHHHHHTTccccTHHHHHHHHHHHHHHHHHHHHHHHHH###################### DISOP:02AL 434-441| PSIPRED ccHHHHHHHHHccccccccHHHHHHcccHHHHHHHHcccHHHHHHHHHHcccEEccccccHHHHHHHHHHccccccccccccEEEEEcccccccccHHHHHHHHcHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccccccHHHHHHHHccccccccccccccccccccccccEEEcHHHHHHHHHHHHHcHHHHHHHccccccccEEEEEEEEEccccEEEEEccccHHHHHHHcccccccccEEEEEEcccccccccHHHccccccHHHHHHHccEEEccEEEEEcccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcHHHHHHHHHcccccccccccccccccccccc //