[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : nuoL
DDBJ      :nuoL         putative NADH dehydrogenase I chain L
Swiss-Prot:             

Homologs  Archaea  32/68 : Bacteria  675/915 : Eukaryota  49/199 : Viruses  0/175   --->[See Alignment]
c.97.1d.58.34
:628 amino acids
:SECSTR
:PSIPRED
:RPS:PDB   228->477 2c1wA PDBj 3e-23 9.7 %
:RPS:SCOP  156->274 1qd1A2  d.58.34.1 * 1e-10 15.1 %
:RPS:SCOP  296->379 1jtkA  c.97.1.1 * 7e-09 7.3 %
:RPS:PFM   67->125 PF00662 * Oxidored_q1_N 3e-13 47.5 %
:RPS:PFM   145->405 PF00361 * Oxidored_q1 4e-42 41.2 %
:HMM:PFM   136->406 PF00361 * Oxidored_q1 3.9e-82 39.9 268/270  
:HMM:PFM   65->125 PF00662 * Oxidored_q1_N 2.7e-21 41.0 61/62  
:HMM:PFM   432->479 PF06455 * NADH5_C 1.2e-06 27.1 48/181  
:BLT:SWISS 53->607 NUOL_MYCTU e-166 62.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57504.1 GT:GENE nuoL GT:PRODUCT putative NADH dehydrogenase I chain L GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2823919..2825805) GB:FROM 2823919 GB:TO 2825805 GB:DIRECTION - GB:GENE nuoL GB:PRODUCT putative NADH dehydrogenase I chain L GB:PROTEIN_ID BAD57504.1 LENGTH 628 SQ:AASEQ MDTATLSLLPALPLAGAVVLLLIGRRGDRWGHLLGTATALASFVVAVVAFVAMLGRAEPARAIHTDLFSWVPVAGLQVDFGLSLDQLSMCFVLLITGVGTLIHVYSIGYMNADPGRRRFFAYLNLFLAAMLILVLANNYLVLYLGWEGVGLASYLLIGFWYHKPSAATAAKKAFVVNRVGDMGLALAMMAMFATFGSVGFDTVFAAAPGASEATLTAIGLLLLLAACGKSAQVPLQSWLGDAMEGPTPVSALIHAATMVTAGVYLIARSNAIFDLAPGAQLGVVLVGAVTLLFGAIIGCAKDDIKKALAASTMSQIGYMVLAAGLGPAGYAFAIMHLLTHGFFKAGLFLGAGSVMHAMNDETDMRRYGGLRTLLPITYVTFGLGYLAIIGVPPFAGFFSKDKIIEVAFGDGGAGGYALGTAALLGAGLTAFYMTRVMLMTFFGERRWAPDTHPHEAPAVMTGPMILLAIGSVASGLLFVLGNGLQNWLEPVVGAHHAEHAVPPIVVTVLALAVVAVGAGIAYQRYARAEIPRTAPEAVGPLTVAARNDLYGDAVNEGLLMRPGLHLTRSLVFLDNRGIDGLVNGTAALIGGLSARARRIQTGFVRSYALSMFTGAALVAAALVAVRIL GT:EXON 1|1-628:0| BL:SWS:NREP 1 BL:SWS:REP 53->607|NUOL_MYCTU|e-166|62.3|555/633| TM:NTM 14 TM:REGION 3->24| TM:REGION 34->56| TM:REGION 87->109| TM:REGION 129->151| TM:REGION 184->206| TM:REGION 210->231| TM:REGION 246->268| TM:REGION 280->302| TM:REGION 325->347| TM:REGION 372->394| TM:REGION 418->440| TM:REGION 461->483| TM:REGION 500->522| TM:REGION 607->628| SEG 3->22|tatlsllpalplagavvlll| SEG 36->52|tatalasfvvavvafva| SEG 131->144|lilvlannylvlyl| SEG 182->196|mglalammamfatfg| SEG 213->226|atltaiglllllaa| SEG 275->295|lapgaqlgvvlvgavtllfga| SEG 341->352|gffkaglflgag| SEG 407->432|afgdggaggyalgtaallgagltafy| SEG 500->521|avppivvtvlalavvavgagia| SEG 615->625|aalvaaalvav| RP:PDB:NREP 1 RP:PDB:REP 228->477|2c1wA|3e-23|9.7|238/273| RP:PFM:NREP 2 RP:PFM:REP 67->125|PF00662|3e-13|47.5|59/61|Oxidored_q1_N| RP:PFM:REP 145->405|PF00361|4e-42|41.2|257/268|Oxidored_q1| HM:PFM:NREP 3 HM:PFM:REP 136->406|PF00361|3.9e-82|39.9|268/270|Oxidored_q1| HM:PFM:REP 65->125|PF00662|2.7e-21|41.0|61/62|Oxidored_q1_N| HM:PFM:REP 432->479|PF06455|1.2e-06|27.1|48/181|NADH5_C| GO:PFM:NREP 6 GO:PFM GO:0008137|"GO:NADH dehydrogenase (ubiquinone) activity"|PF00662|IPR001516| GO:PFM GO:0042773|"GO:ATP synthesis coupled electron transport"|PF00662|IPR001516| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00662|IPR001516| GO:PFM GO:0008137|"GO:NADH dehydrogenase (ubiquinone) activity"|PF00361|IPR001750| GO:PFM GO:0042773|"GO:ATP synthesis coupled electron transport"|PF00361|IPR001750| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00361|IPR001750| RP:SCP:NREP 2 RP:SCP:REP 156->274|1qd1A2|1e-10|15.1|106/140|d.58.34.1| RP:SCP:REP 296->379|1jtkA|7e-09|7.3|82/131|c.97.1.1| OP:NHOMO 1283 OP:NHOMOORG 756 OP:PATTERN 22-1------------4-------21122422-----------11-1113423-2-1414-2122-11 2221331233211121112-22--132222212222333311131323322-122221--33111422342--------21143312111111---1--1-111-22231--------------1221313211234444422322433344333332222223334333212111112111111211--1-2111111111111111131111111121223111111111112222222222222223332----------------------------------------------------------------------1---1----------1-------11---3--122211---122--21---231111212122111334323653322222222222-22222131211123341232223311232133434432211111111322-11342211111122221111111111111111111211-12222111111211111111111111111222111111112222211222233211111111111233212211-2-1-233224-22223352B333316-2111111111111111111111121222111-3-12-11------1------11---11--522211111111221112221211111-2222211221212122222111211131111111111111111111122221-21111111111111122222111112111-----1----------222222211121222222214222221111111111112----22212-----22323223331111111-111111------------------------------------12--------131 ---------------------------111-11111-----------1------121-----3-1-------1-----------1--------1---11------1------11112-----1-11-1-12--11-----1--11--------1-1------11-112--1--5-1----------1-6--2------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 238 STR:RPRED 37.9 SQ:SECSTR ###################################################################################################################################################################################################################################TTTEEEcc##ccccccccccccEEEEcHHHHTTTcTHHHHHHH########HHHHHHcccccccccHHHHHHHHHHHHHHTTcHHHHHHHHHHHHTTcccHHHHHHHHHHHHHccccccccccccHHHHHTTcccccccccccccHHHHHHHHTcEEEEEEccccccccccTTccEEEEEEEETTcccccEEEEccccHHHHHHHHHHHHHTccccEEEEEEEETTEEEE##EEEEEETTEEEEEEEEEE####################################################################################################################################################### PSIPRED cccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEEcccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHHHHHcccHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //