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Nocardia farcinica IFM 10152 (nfar0)
Gene : polA
DDBJ      :polA         putative DNA polymerase I
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  907/915 : Eukaryota  96/199 : Viruses  14/175   --->[See Alignment]
a.60.7c.120.1c.55.3e.8.1
:910 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   79->231 1ut5B PDBj 3e-08 29.5 %
:BLT:PDB   502->905 1u4bA PDBj 1e-99 45.5 %
:RPS:PDB   20->908 1bgxT PDBj e-164 38.2 %
:RPS:SCOP  22->189 1exnA2  c.120.1.2 * 2e-39 19.5 %
:RPS:SCOP  191->304 1bgxT1  a.60.7.1 * 9e-23 35.7 %
:RPS:SCOP  506->908 1bgxT4  e.8.1.1 * e-130 46.4 %
:HMM:SCOP  20->190 1bgxT2 c.120.1.2 * 6.8e-59 53.4 %
:HMM:SCOP  190->293 1xo1A1 a.60.7.1 * 1.8e-33 42.3 %
:HMM:SCOP  325->501 2hhvA1 c.55.3.5 * 1.5e-34 34.1 %
:HMM:SCOP  505->909 1t7pA2 e.8.1.1 * 2e-137 53.0 %
:RPS:PFM   23->189 PF02739 * 5_3_exonuc_N 4e-45 55.3 %
:RPS:PFM   191->282 PF01367 * 5_3_exonuc 4e-14 41.3 %
:RPS:PFM   399->449 PF01612 * 3_5_exonuc 1e-04 39.2 %
:RPS:PFM   556->905 PF00476 * DNA_pol_A e-116 58.1 %
:HMM:PFM   528->908 PF00476 * DNA_pol_A 1.1e-134 48.5 379/383  
:HMM:PFM   22->189 PF02739 * 5_3_exonuc_N 9.7e-65 51.8 168/169  
:HMM:PFM   191->289 PF01367 * 5_3_exonuc 2.5e-29 40.4 99/101  
:HMM:PFM   362->454 PF01612 * 3_5_exonuc 5.9e-07 26.7 90/174  
:BLT:SWISS 20->910 DPO1_MYCTU 0.0 70.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56721.1 GT:GENE polA GT:PRODUCT putative DNA polymerase I GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2047290..2050022 GB:FROM 2047290 GB:TO 2050022 GB:DIRECTION + GB:GENE polA GB:PRODUCT putative DNA polymerase I GB:PROTEIN_ID BAD56721.1 LENGTH 910 SQ:AASEQ MSSPTTASRSTPAPGAEGGRPTLLLLDGHSLAYRAFFALPAENFKTVTGQTTNAVYGFTAMLINLLRDEKPTHIAAAFDVSRKTFRTEAYPEYKANRSQTPDEFRGQVELTKDVLGALGIPVMAIDGFEADDVIATLTTQAKAEGFRILIVTGDRDSIQLVDDDVTVLYPRKGVSDLTRFTPEEVMTKYGLTPNQYPDYAALRGDPSDNLPGIPGVGEKTAAKWIREYGDLATLVDKVDTVKGKVGDALRAHLSSVVLNRQLTEMVKDVPLPYTPDQLAQGPWDREKIHRLFDDLEFRVLRDRLFETLAPPQQEAESGFEISGGALAVGAVADWLAEHAKAGVRHGVSVVGSGAPARGDVQALAIAAADGESGYIDVTVLTPEDEAALAAWLADPAVPKALHEAKSAMHALRGRGWTLGGLTSDTALAAYLVRPGQRSFNLDDLSLRYLHRELRAETDDNAQLSLLDDEDAVDAETARAEMLRARAVLDLAAALDAELEQIESTALLTDMELPLLGVLATLEEAGIAVDCEQLEALQRQFADKVAQAAEAAYGVIGKQINLGSPKQLQVVLFDELDMPKTKRTKTGYTTDADALESLFEKTQHPFLEHLLAHRDATRLKVTVDGLLKSVADDGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDTGRMIRDTFVVGPGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNSGEDLHSFVASKAFDIPIAEVSPELRRRIKAMSYGLAYGLSSYGLSAQLKISTAEAKEQMDIYFSRFGRIRDYLYEVVEQARKVGYTETLFGRRRYLPDLDSSNRQRREAAERMALNAPIQGTAADIIKVAMIDVHRGIREAGLRSRMLLQIHDELVFEVAEGERDALEQLAREKMSAAIALSVPLDVSVGTGRSWDAAAH GT:EXON 1|1-910:0| BL:SWS:NREP 1 BL:SWS:REP 20->910|DPO1_MYCTU|0.0|70.8|890/904| SEG 2->16|sspttasrstpapga| SEG 235->247|vdkvdtvkgkvgd| SEG 342->353|gvrhgvsvvgsg| SEG 382->396|pedeaalaawladpa| SEG 411->422|lrgrgwtlgglt| SEG 482->499|lraravldlaaaldaele| BL:PDB:NREP 2 BL:PDB:REP 79->231|1ut5B|3e-08|29.5|149/272| BL:PDB:REP 502->905|1u4bA|1e-99|45.5|402/580| RP:PDB:NREP 1 RP:PDB:REP 20->908|1bgxT|e-164|38.2|812/828| RP:PFM:NREP 4 RP:PFM:REP 23->189|PF02739|4e-45|55.3|161/165|5_3_exonuc_N| RP:PFM:REP 191->282|PF01367|4e-14|41.3|92/100|5_3_exonuc| RP:PFM:REP 399->449|PF01612|1e-04|39.2|51/171|3_5_exonuc| RP:PFM:REP 556->905|PF00476|e-116|58.1|346/360|DNA_pol_A| HM:PFM:NREP 4 HM:PFM:REP 528->908|PF00476|1.1e-134|48.5|379/383|DNA_pol_A| HM:PFM:REP 22->189|PF02739|9.7e-65|51.8|168/169|5_3_exonuc_N| HM:PFM:REP 191->289|PF01367|2.5e-29|40.4|99/101|5_3_exonuc| HM:PFM:REP 362->454|PF01612|5.9e-07|26.7|90/174|3_5_exonuc| GO:PFM:NREP 11 GO:PFM GO:0003677|"GO:DNA binding"|PF02739|IPR020046| GO:PFM GO:0008409|"GO:5'-3' exonuclease activity"|PF02739|IPR020046| GO:PFM GO:0003677|"GO:DNA binding"|PF01367|IPR020047| GO:PFM GO:0008409|"GO:5'-3' exonuclease activity"|PF01367|IPR020047| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01612|IPR002562| GO:PFM GO:0005622|"GO:intracellular"|PF01612|IPR002562| GO:PFM GO:0006139|"GO:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"|PF01612|IPR002562| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF01612|IPR002562| GO:PFM GO:0003677|"GO:DNA binding"|PF00476|IPR001098| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF00476|IPR001098| GO:PFM GO:0006260|"GO:DNA replication"|PF00476|IPR001098| RP:SCP:NREP 3 RP:SCP:REP 22->189|1exnA2|2e-39|19.5|154/166|c.120.1.2| RP:SCP:REP 191->304|1bgxT1|9e-23|35.7|112/116|a.60.7.1| RP:SCP:REP 506->908|1bgxT4|e-130|46.4|394/406|e.8.1.1| HM:SCP:REP 20->190|1bgxT2|6.8e-59|53.4|163/173|c.120.1.2|1/1|PIN domain-like| HM:SCP:REP 190->293|1xo1A1|1.8e-33|42.3|104/0|a.60.7.1|1/1|5' to 3' exonuclease, C-terminal subdomain| HM:SCP:REP 325->501|2hhvA1|1.5e-34|34.1|167/0|c.55.3.5|1/1|Ribonuclease H-like| HM:SCP:REP 505->909|1t7pA2|2e-137|53.0|396/494|e.8.1.1|1/1|DNA/RNA polymerases| OP:NHOMO 1493 OP:NHOMOORG 1017 OP:PATTERN -------------------------------------------------------------------- 1211211111111122222-22112222222222222222222222121111222111112231222222111111111111222222111111111--1111111111111111111111111111111111111111111111112111111111111111111111111111111111112111111112222222322222222222222222321132142222222222222222222222222222111111111111111121111111111111111111111111111111111111111111111111111111112111111111111111111112112212122212111111111111111111111111111111111111111111111111-111131111111111111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111211-1121111111111121111112112211111111111111111111111111111111111222111232112122111111111111111111111111111112221122112222222222222212222221-1111211111122222222221222222-22222222222222222222222212222222222222322222222222221233323323222111111111111111112111111111111111111111111111111111111111111111111111111222122222222222222222222111111111111111111111111111112-11211111111211111111111111111111 23--431-C54---1---------------------------------------------------------------------------------------------42511222-2122222572526F2-4251112222211221122-71131212112212111311212244K4444364A7-652332111 ------11---------------------------------------------------------1111--------------------11-----1-------1---------1-----------------------1----------1----------1-------------- STR:NPRED 891 STR:RPRED 97.9 SQ:SECSTR ##################EcTTcccccccTHHHHTTcccTcTTccccccccccccTTHHHHHHHGGGHTccccccccccccccccccGGGGTTTcccccccTTcTTGGGTHHHHHHHTTccccccccccHHHHHHHHHHHHHHHTcccccccccTTccTTccTTcccccccccEccccccccTTHHHHTcccGGGTTTTTTccccccccccccccccccTTTTTGGGTTcccccccccccccTTTcHHHHcccccTTcGGGccccccccccccccccccHccccHHHHHHHHTTTTcccTTccccccccccccEEEEcccccTTcccEEEccccccTTTGccEEEEEEEccccccTTccccccEEEcccccEEEccccHHTTEEEccccHHHHHHHccccccTTHHHHHHHHHHHTccccccccHHHHHHHHcTTcccccTTHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHTTcHHHHHHHHTTHHHHHHHHHHHHHHcccccTTTHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHTTTTTTccccccccccccccGGGTcTTTTGGGGGTccTTHHHHTHHHHccccTTcccTTTcccTTcccccEEEcccccccccEEEcccTTccccccTTTTTTGGGcccccccEcEEEEEEccHHHHHHHHTTTcTTHHHHHHHTccHHHHHHHHHHTccTTcccTTHHHHHHHHHHHTTccccHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHTHHHHTTcccccccccccccGGGccccHHHHHHHHHHHTTHHHHTHHHHHHHTHHHHHHHHHHHTHHTcEEEEEETTEEEEEccHTTHHHHHHHHHHHHHccccccccccEEccEEccHHHHc# DISOP:02AL 1-22, 907-910| PSIPRED cccccccccccccccccccccEEEEEEcHHHHHHHHHHccccccccccccEEHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHcccEEEEEEcccHHHHHccccEEEEEcccccccccEEcHHHHHHHccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccEEEEEEEEcccEEEEEEcccccHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHcccccccccccHHHHHHHHccccccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccEEEEEcccccccccccccccHHHcccEEEcccccEEEEEEccHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEEccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccEEEEEccHHHHHHHHHHHHHHHHHHccccccEEEEccccccHHHHcc //