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Nocardia farcinica IFM 10152 (nfar0)
Gene : poxB
DDBJ      :poxB         putative pyruvate oxidase
Swiss-Prot:             

Homologs  Archaea  55/68 : Bacteria  758/915 : Eukaryota  172/199 : Viruses  0/175   --->[See Alignment]
c.31.1c.36.1c.92.2
:593 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->571 3ey9A PDBj 1e-78 34.7 %
:RPS:PDB   5->545 1bfdA PDBj 2e-85 24.2 %
:RPS:SCOP  5->526 1fp4B  c.92.2.3 * 2e-52 9.1 %
:HMM:SCOP  1->187 1ybhA2 c.36.1.5 * 1.5e-48 37.8 %
:HMM:SCOP  189->364 2djiA1 c.31.1.3 * 4.3e-41 35.6 %
:HMM:SCOP  365->562 2djiA3 c.36.1.9 * 3.5e-54 42.3 %
:RPS:PFM   6->173 PF02776 * TPP_enzyme_N 3e-17 36.1 %
:RPS:PFM   199->329 PF00205 * TPP_enzyme_M 3e-18 40.6 %
:RPS:PFM   412->543 PF02775 * TPP_enzyme_C 1e-18 40.8 %
:HMM:PFM   4->173 PF02776 * TPP_enzyme_N 1.7e-50 42.3 168/172  
:HMM:PFM   389->544 PF02775 * TPP_enzyme_C 3.9e-32 36.9 149/150  
:HMM:PFM   199->329 PF00205 * TPP_enzyme_M 1.8e-27 34.4 131/137  
:BLT:SWISS 1->571 YDAP_BACSU 1e-92 37.7 %
:PROS 426->445|PS00187|TPP_ENZYMES
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54993.1 GT:GENE poxB GT:PRODUCT putative pyruvate oxidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(139777..141558) GB:FROM 139777 GB:TO 141558 GB:DIRECTION - GB:GENE poxB GB:PRODUCT putative pyruvate oxidase GB:PROTEIN_ID BAD54993.1 LENGTH 593 SQ:AASEQ MATQVADQVLARLREWGVDQVFGYPGDGINGLVAAFGRAGNTPRFVQTRHEEMAAFAAVAYAKFGDRVGVCTATSGPGAIHLLNGLYDAKLDHVPVVAIVGQTARSAMGGSYQQEVDLQALFKDVASDYLVEVNVASQLPNALDRAMRTALTRRAPTALIIPADLQEEDYEPPAHAFKQVPSSPPHDLTSTAVPPAEHLRRAAEVVNAGDKVAILIGQGARGAAAEVEQLAELTGAGVAKALLGKDVLSDELPYVTGSIGLLGTKASWELMQDCDTLVIVGSNFPYSQFLPEFGQARAVQIDRDATLIGMRYPTEVDLVGDAKATLRELLPLVERKTDRAWRESITEQVRRSWEITEAQAMVDAEPVNPMRVVWELSRVLPENAVVTADSGSSTNWYARCLRMRGQMRGSLSGTLATMGCGVPYALGAKFAHPDRPVVALVGDGAMQMNGQAELLTIARYRELWSDPRLVVCVFHNNDLNQVTWELRAMGGSPKFEESQALPDVSYAELARVMGLQAVEIRDPAELAPAWERALTADGPVLLDVHCDPEVPPIPPHAEYDMVKDLGKSILQGDPNAWHLLVQGVKSKAKEFRR GT:EXON 1|1-593:0| BL:SWS:NREP 1 BL:SWS:REP 1->571|YDAP_BACSU|1e-92|37.7|552/574| PROS 426->445|PS00187|TPP_ENZYMES|PDOC00166| SEG 54->62|aafaavaya| BL:PDB:NREP 1 BL:PDB:REP 5->571|3ey9A|1e-78|34.7|544/571| RP:PDB:NREP 1 RP:PDB:REP 5->545|1bfdA|2e-85|24.2|508/523| RP:PFM:NREP 3 RP:PFM:REP 6->173|PF02776|3e-17|36.1|166/170|TPP_enzyme_N| RP:PFM:REP 199->329|PF00205|3e-18|40.6|128/138|TPP_enzyme_M| RP:PFM:REP 412->543|PF02775|1e-18|40.8|125/139|TPP_enzyme_C| HM:PFM:NREP 3 HM:PFM:REP 4->173|PF02776|1.7e-50|42.3|168/172|TPP_enzyme_N| HM:PFM:REP 389->544|PF02775|3.9e-32|36.9|149/150|TPP_enzyme_C| HM:PFM:REP 199->329|PF00205|1.8e-27|34.4|131/137|TPP_enzyme_M| GO:PFM:NREP 5 GO:PFM GO:0030976|"GO:thiamin pyrophosphate binding"|PF02776|IPR012001| GO:PFM GO:0000287|"GO:magnesium ion binding"|PF00205|IPR012000| GO:PFM GO:0030976|"GO:thiamin pyrophosphate binding"|PF00205|IPR012000| GO:PFM GO:0003824|"GO:catalytic activity"|PF02775|IPR011766| GO:PFM GO:0030976|"GO:thiamin pyrophosphate binding"|PF02775|IPR011766| RP:SCP:NREP 1 RP:SCP:REP 5->526|1fp4B|2e-52|9.1|492/522|c.92.2.3| HM:SCP:REP 1->187|1ybhA2|1.5e-48|37.8|185/0|c.36.1.5|1/2|Thiamin diphosphate-binding fold (THDP-binding)| HM:SCP:REP 189->364|2djiA1|4.3e-41|35.6|174/0|c.31.1.3|1/1|DHS-like NAD/FAD-binding domain| HM:SCP:REP 365->562|2djiA3|3.5e-54|42.3|189/0|c.36.1.9|1/1|Thiamin diphosphate-binding fold (THDP-binding)| OP:NHOMO 2867 OP:NHOMOORG 985 OP:PATTERN 11-1--3443344432-31211143--21122233222222221312213343111-----22-1-11 3261742222223255644-43226B444445344454DC2222223-232165443311334235978521111111-211811111223112--111-1111132211---------------21111111111222231111832523322211113111222333721111111211111211111-123444443561454435224434444235242-4444432524444444444444423333112145112-27622553331343231112---22222222222222-------------211222111122125-------4-32133111-112--2122165222121221112--1-112222-11-1338A92147346433333332316-55644837662-5332369664786423256832245475555555532112223-----------------------------2323226B9877898878555588DD88884676G677722554323336243A53333111211111111112422-922212223233412213112332222343521111111111-1-------1111211322241312222332422322222322233---311111-11165543545666576766-6646767656666665664556653346455555556555553765666651-65555554455511---1---111122732222222-122-3112222221311232878745344578632222----1---313243333322222332222222211111111331122-------------------------------------11--1-111122 ----12--------142223123445511111111123132331112223334211111111211212-1221112212221111132-11122111111112222-16-22111121--122-22-515H2-223111-2-232121122-1311113123-42111122133-21118111225124123223111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 591 STR:RPRED 99.7 SQ:SECSTR ccEEHHHHHHHHHHHTTccEEEEcccGGGHHHHTTccTHTcTcEEEEcccHHHHHHHHHHHHHHHTccEEEEEEHHHHHHHTHHHHHHHHHHTccEEEEEEEccHHHHTTcTTccTTGGGTTTTccccEEEccccGGGHHHHHHHHHHHHHcccccEEEEEEGGGTTccccGGGGGGTTccccccTcccccccccHHHHHHHHHHHHHccccEEEEcHHHHTcHHHHHHHHHHHTccEEccccccccccTTcTTEEEEccGccHHHHHHHHTTccEEEEEcccTTccccccTcTTcEEEEEEccHHHHHcHccccEEEEccHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccTTcEEEEEcGGGHHHHHHHcccccTETcEEEcTTcccccHHHHHHHHHHHcTTccEEEEEEHHHHTTTGGHGHHHHHHHTcEEcTcccEEEEEEccccHHHHHHHHHTTcccccccccccccccHHHHHHHTTcEEEEEccHHHHHHHHHHHHHccccEEEEEEcccccccTTHHGGGccHHTTTTHHHHHTcccHHHHHTTcccHHHHH## DISOP:02AL 588-593| PSIPRED ccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccEEEEEEccHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHccccEEEccccccccccccccccccccccccHHHHHHHHcccEEEEEcccccccccccccccccEEEEEccHHHHcccccccEEEEEcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccEEEEcccHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEcHHHHHccHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHcccccccccccccccccHHHHHHHccccEEEEccHHHHHHHHHHHHHccccEEEEEEEccccccccccccHHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcc //