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Nocardia farcinica IFM 10152 (nfar0)
Gene : prfA
DDBJ      :prfA         putative peptide chain release factor 1
Swiss-Prot:RF1_NOCFA    RecName: Full=Peptide chain release factor 1;         Short=RF-1;

Homologs  Archaea  0/68 : Bacteria  911/915 : Eukaryota  190/199 : Viruses  0/175   --->[See Alignment]
e.38.1
:356 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->328 3d5aX PDBj 8e-65 45.5 %
:RPS:PDB   5->328 2b3tB PDBj 8e-82 46.4 %
:RPS:SCOP  7->328 1gqeA  e.38.1.1 * 3e-93 41.1 %
:HMM:SCOP  26->357 1rq0A_ e.38.1.1 * 6.3e-96 47.5 %
:RPS:PFM   76->178 PF03462 * PCRF 1e-19 48.0 %
:RPS:PFM   214->306 PF00472 * RF-1 1e-12 46.2 %
:HMM:PFM   211->321 PF00472 * RF-1 4.1e-44 47.7 111/114  
:HMM:PFM   70->178 PF03462 * PCRF 2.1e-36 50.0 104/116  
:BLT:SWISS 1->356 RF1_NOCFA e-162 100.0 %
:PROS 228->244|PS00745|RF_PROK_I
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55899.1 GT:GENE prfA GT:PRODUCT putative peptide chain release factor 1 GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1164493..1165563 GB:FROM 1164493 GB:TO 1165563 GB:DIRECTION + GB:GENE prfA GB:PRODUCT putative peptide chain release factor 1 GB:PROTEIN_ID BAD55899.1 LENGTH 356 SQ:AASEQ MTQPSAIDDILAEHAGLETQLADPTLHNDPSAARRVGKRFAELAPIMATYRKLESARADLTAARELAADDASFAAEVPELERQVDELEQALADLLAPRDPHDGDDVVLEVKSGEGGEESALFAADLARMYMRYAERRGWRVEVLDATVSDLGGYKEATLSIKSRDAARDGVWSRFKFEGGVHRVQRVPVTESQGRIHTSAAGVLIYPEPDEVAEVQIDESDLRIDVYRSSGKGGQGVNTTDSAVRITHLPTGIVVTCQNERSQLQNKARAMQVLAARLQALAEEQAEQEAAAGRASQIRTVDRSERIRTYNFPENRITDHRIGYKSHNLDAVLDGDLDALLDALGKADREARMAAE GT:EXON 1|1-356:0| SW:ID RF1_NOCFA SW:DE RecName: Full=Peptide chain release factor 1; Short=RF-1; SW:GN Name=prfA; OrderedLocusNames=NFA_10540; SW:KW Complete proteome; Cytoplasm; Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->356|RF1_NOCFA|e-162|100.0|356/356| GO:SWS:NREP 2 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| PROS 228->244|PS00745|RF_PROK_I|PDOC00607| SEG 85->96|deleqaladlla| SEG 268->295|aramqvlaarlqalaeeqaeqeaaagra| SEG 329->348|ldavldgdldalldalgkad| BL:PDB:NREP 1 BL:PDB:REP 22->328|3d5aX|8e-65|45.5|301/354| RP:PDB:NREP 1 RP:PDB:REP 5->328|2b3tB|8e-82|46.4|274/300| RP:PFM:NREP 2 RP:PFM:REP 76->178|PF03462|1e-19|48.0|98/115|PCRF| RP:PFM:REP 214->306|PF00472|1e-12|46.2|93/107|RF-1| HM:PFM:NREP 2 HM:PFM:REP 211->321|PF00472|4.1e-44|47.7|111/114|RF-1| HM:PFM:REP 70->178|PF03462|2.1e-36|50.0|104/116|PCRF| GO:PFM:NREP 5 GO:PFM GO:0005737|"GO:cytoplasm"|PF03462|IPR005139| GO:PFM GO:0006415|"GO:translational termination"|PF03462|IPR005139| GO:PFM GO:0016149|"GO:translation release factor activity, codon specific"|PF03462|IPR005139| GO:PFM GO:0003747|"GO:translation release factor activity"|PF00472|IPR000352| GO:PFM GO:0006415|"GO:translational termination"|PF00472|IPR000352| RP:SCP:NREP 1 RP:SCP:REP 7->328|1gqeA|3e-93|41.1|316/362|e.38.1.1| HM:SCP:REP 26->357|1rq0A_|6.3e-96|47.5|326/333|e.38.1.1|1/1|Release factor| OP:NHOMO 2171 OP:NHOMOORG 1101 OP:PATTERN -------------------------------------------------------------------- 2222222222222222222-2222222222222222222222222222222222222222222222222222222222222222222233322212222223222322221222222222112231122222222222222222222222222112222222222222222222222222222221222222221222222222222222222222222222222222222222222222221222222222212222222222222222222222222122222222222222222222222222222222222222222222223222222222222222222222222222222222222222222222222222222222222222222222222222222212212222222222222222222232222222222222222222222222222122222223322222212222222222222212222222222222222222212222222222222222222222222222222221122222222122222222222222222222222222222233333432222222232222222222222222222222222221222222222222222222222222122222122222212222222222122223223323-12233322321221222222223222332332232222333331222121122222222212222222212122222222211222222221222222222222222222232333212122221222222222222122212222222221222222222222222222222222222222212222221-111-1111111111111112222222222222 23--221-511-1111211111111111111111111111111111111111111111111111111111111111111111111111-21121111111111111-1412322233122114321231BJ2-32421222-222222222123222232111111-122311114254M3332344651793342223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 324 STR:RPRED 91.0 SQ:SECSTR ####cccHHHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTcTTcHHHHHHTcccccHHHHHHHHHHHccccccccGGGccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHTTccccEEEEEEcTTccEEEEEEEEccTTHEccccHHHHGGGcEEEEEEEccTTccccccEEEEEEEEccccccTTTccccccccEEEEEcccccccTTTcccccEEEEEEETTTccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTccccccccEEEEEETTTTEEEEGGGTEEEcc############################ DISOP:02AL 1-3, 282-306, 354-356| PSIPRED ccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccEEEEEEEEEccccccHHHHHHHHccccEEEEEEcccccccccEEEEEEEEEEEEEccccccccccHHHEEEEEEEccccccccccEEccEEEEEEEcccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccEEEEEEccccccccHHHHcccHHHHHHHHHHHHHHHHHHcc //