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Nocardia farcinica IFM 10152 (nfar0)
Gene : purD
DDBJ      :purD         putative phosphoribosylglycinamide synthetase
Swiss-Prot:             

Homologs  Archaea  58/68 : Bacteria  827/915 : Eukaryota  182/199 : Viruses  0/175   --->[See Alignment]
b.84.2c.30.1d.142.1
:423 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->417 2qk4B PDBj 4e-67 37.6 %
:RPS:PDB   2->420 2c00B PDBj 4e-41 15.9 %
:RPS:SCOP  1->101 1vkzA2  c.30.1.1 * 1e-18 30.6 %
:RPS:SCOP  102->318 1gsoA3  d.142.1.2 * 4e-27 33.3 %
:RPS:SCOP  320->418 1gsoA1  b.84.2.1 * 8e-20 37.9 %
:HMM:SCOP  1->101 1gsoA2 c.30.1.1 * 8.7e-31 50.5 %
:HMM:SCOP  102->317 1vkzA3 d.142.1.2 * 5.9e-54 36.0 %
:HMM:SCOP  320->419 1gsoA1 b.84.2.1 * 1.1e-25 50.5 %
:RPS:PFM   1->100 PF02844 * GARS_N 2e-13 46.0 %
:RPS:PFM   101->287 PF01071 * GARS_A 2e-37 48.7 %
:RPS:PFM   322->417 PF02843 * GARS_C 4e-13 52.7 %
:HMM:PFM   101->287 PF01071 * GARS_A 1.8e-70 49.2 187/194  
:HMM:PFM   1->100 PF02844 * GARS_N 1.4e-36 52.0 100/100  
:HMM:PFM   322->415 PF02843 * GARS_C 9.8e-28 46.2 91/93  
:BLT:SWISS 1->423 PUR2_MYCLE e-142 62.8 %
:PROS 281->288|PS00184|GARS
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55400.1 GT:GENE purD GT:PRODUCT putative phosphoribosylglycinamide synthetase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 569854..571125 GB:FROM 569854 GB:TO 571125 GB:DIRECTION + GB:GENE purD GB:PRODUCT putative phosphoribosylglycinamide synthetase GB:PROTEIN_ID BAD55400.1 LENGTH 423 SQ:AASEQ MRVLVIGSGAREHALVLALRRDPAVTALIAAPGNAGIAQHAQVRPVDASSADAVVALATDVSADLVVIGPEVPLVLGVADAVRAAGIACFGPSAAAARIEGSKAFAKDVMAAAGVRTAHSEVVDSPAELDAALDRFGPTWVVKDDGLAAGKGVVVTADRSAARDHGAELLEQGHPVLLESFLDGPEVSLFCLVDGETVVPLLPAQDHKRVGDGDTGPNTGGMGAYTPLPWLPAETVSEIVEDVVRPVAAELVRRDCPFSGLLYAGLAIGAAGPAVVEFNCRFGDPETQAVLALLESPLGELLHATATGTLDKVAAPRWRDGAAVTVVLAAENYPGRPRLGDVISGAGESSGDDTATVLHAGTATREDGALVSSGGRVLNVVGVGADLAEARAKAYQRMSGIKLPGGHFRTDIGLAAVESRISV GT:EXON 1|1-423:0| BL:SWS:NREP 1 BL:SWS:REP 1->423|PUR2_MYCLE|e-142|62.8|417/422| PROS 281->288|PS00184|GARS|PDOC00164| SEG 46->67|vdassadavvalatdvsadlvv| SEG 260->272|gllyaglaigaag| SEG 291->302|lallesplgell| BL:PDB:NREP 1 BL:PDB:REP 2->417|2qk4B|4e-67|37.6|410/424| RP:PDB:NREP 1 RP:PDB:REP 2->420|2c00B|4e-41|15.9|403/439| RP:PFM:NREP 3 RP:PFM:REP 1->100|PF02844|2e-13|46.0|100/100|GARS_N| RP:PFM:REP 101->287|PF01071|2e-37|48.7|187/193|GARS_A| RP:PFM:REP 322->417|PF02843|4e-13|52.7|93/93|GARS_C| HM:PFM:NREP 3 HM:PFM:REP 101->287|PF01071|1.8e-70|49.2|187/194|GARS_A| HM:PFM:REP 1->100|PF02844|1.4e-36|52.0|100/100|GARS_N| HM:PFM:REP 322->415|PF02843|9.8e-28|46.2|91/93|GARS_C| GO:PFM:NREP 4 GO:PFM GO:0004637|"GO:phosphoribosylamine-glycine ligase activity"|PF02844|IPR020562| GO:PFM GO:0009113|"GO:purine base biosynthetic process"|PF02844|IPR020562| GO:PFM GO:0004637|"GO:phosphoribosylamine-glycine ligase activity"|PF02843|IPR020560| GO:PFM GO:0009113|"GO:purine base biosynthetic process"|PF02843|IPR020560| RP:SCP:NREP 3 RP:SCP:REP 1->101|1vkzA2|1e-18|30.6|85/85|c.30.1.1| RP:SCP:REP 102->318|1gsoA3|4e-27|33.3|216/218|d.142.1.2| RP:SCP:REP 320->418|1gsoA1|8e-20|37.9|95/96|b.84.2.1| HM:SCP:REP 1->101|1gsoA2|8.7e-31|50.5|101/0|c.30.1.1|1/1|PreATP-grasp domain| HM:SCP:REP 102->317|1vkzA3|5.9e-54|36.0|214/220|d.142.1.2|1/1|Glutathione synthetase ATP-binding domain-like| HM:SCP:REP 320->419|1gsoA1|1.1e-25|50.5|99/99|b.84.2.1|1/1|Rudiment single hybrid motif| OP:NHOMO 1167 OP:NHOMOORG 1067 OP:PATTERN --11--1111111111-111-11111111111111111111111111111111111111-11-1--11 1111111111111111111-1111111111111111111112111111111111111111111111111111111111111111111111111111---11111111111---------------11111111111222221-1211111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111-2-11111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111111111111-1111111111111111111111111111111111111111111111111111-111111111111---------------111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111------11111111111111111-11111111111111111111111112111111111111111111111111111111111111111--1111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111--------1---------------------------1-11111111111 ----111-----11111111111111111111111111111111111112222212111111111111111111111-1111111111-12111111111111111-12-212121411-111121111A92-11211111111-11111111314322233121-1211751221211H1111122441111111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 421 STR:RPRED 99.5 SQ:SECSTR cEEEEcccHHHHHHHHHHHHHTTcEEEEEEEGGGTTcGGGGGccGGTTTcHHHHHHHHHHHTccEEEccccTTTTcHHHHHHHHTTcEEccccHHHHHHHHcHHHHHHHHHHHTcccccccccccHHHHHHHHHHHcccEEEEETTccEEEEccTTTHHHHHHHHHHHHTcccccEEEEEcccccEEEEEEEEEccccEEEEEEEEEEETcEEEEEETTEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHTcEEEEEEEEEEETTEEEEEEEEccccTTHHHHHHHHcccHHHHHHHHHTTccccTTccccGGGcccccEEEEEEEEcccTTTcccccEEccEEEccccTTEEEEEcccTTcEEcccccEEEEEEEEEccHHHHHHHHHHHHHHcEEETccccHHHHHHHTTcHH## DISOP:02AL 423-424| PSIPRED cEEEEEcccHHHHHHHHHHHHcccccEEEEEcccHHHcccccEEEcccccHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHcccEEEcccHHHHHHcccHHHHHHHHHHcccccccccEEccHHHHHHHHHHccccEEEEEccccccccEEEEccHHHHHHHHHHHHHcccEEEEEEEEccEEEEEEEEEccccEEEEcHHHHHHHHccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEccEEEEEEEEcccccccHHHHHHHHHccHHHHHHHHHccccccccccEEccccEEEEEEccccccccccccccccccHHHccccccEEEEcccccccccEEEEcccEEEEEEEEcccHHHHHHHHHHHHHHccccccEEccHHHHHHHHHHccc //