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Nocardia farcinica IFM 10152 (nfar0)
Gene : recB
DDBJ      :recB         putative RecB protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  320/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.37.1c.52.1
:1113 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->144,273->1108 1w36B PDBj 6e-57 33.4 %
:RPS:PDB   28->73,273->347 3e1sA PDBj 2e-11 16.0 %
:RPS:PDB   445->521 3bm3B PDBj 3e-04 9.6 %
:RPS:PDB   567->651 1b77A PDBj 9e-05 13.7 %
:RPS:SCOP  24->73,273->347 1w36B1  c.37.1.19 * 2e-09 48.0 %
:RPS:SCOP  445->521,627->666 1pjrA2  c.37.1.19 * 2e-11 24.7 %
:RPS:SCOP  805->1108 1w36B3  c.52.1.24 * 3e-30 29.9 %
:HMM:SCOP  25->719 1qhh.1 c.37.1.19 * 1.8e-86 30.9 %
:HMM:SCOP  803->1108 1w36B3 c.52.1.24 * 2.6e-67 40.5 %
:RPS:PFM   26->73,273->347,445->527 PF00580 * UvrD-helicase 2e-11 45.3 %
:HMM:PFM   15->521 PF00580 * UvrD-helicase 1.9e-73 28.5 425/533  
:BLT:SWISS 15->151,273->1106 EX5B_MYCTU e-120 40.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57393.1 GT:GENE recB GT:PRODUCT putative RecB protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2710880..2714221 GB:FROM 2710880 GB:TO 2714221 GB:DIRECTION + GB:GENE recB GB:PRODUCT putative RecB protein GB:PROTEIN_ID BAD57393.1 LENGTH 1113 SQ:AASEQ MSTPFALDHAPVTPETFDPCGPLPRGTTVLEASAGTGKTHAIVGLAVRYVAEAGVRIAELLLVTFSRAATQELRERARDRFVAVAAALADPDSARAAGDELIAHLAAADDTEVALRRTRLLTALSDFDAGTIATTHSFCQRMLDELGLAGERDTAARLVETVDDLVVTVADDLYLHRYARAQPPFGRKEAHTLALAAVRDRHARLVPDDEDEPGERVAFAAAVRAETERRKRLAGLRDFDDLLVLLHDVLADPDHGEGACARVRARYRVALVDEFQDTDPLQWDILRRSFHGHTTLVLVGDPKQAIYAFRGAEVLSYLDAVAHADSRKELTRNWRSDAGLLRALDHLQGGAALGHPEISVYPVEATRPWSRLSGPAELITPLRLRCLPRTGAGPLNKSGFPAVGRQRAKVADDLAADLVRLLESGAEVTDGHGAGAVRRPVAAGDIAVLVRTRTQIDVVRAALDRVGVASVLAGGTSVFGTPSATHWLWVLRALEQPHRSDRVRLAAATPILGYPPAEIDRGGADLVGRVSAQLRDAARLFARAGFAAVYERLAAQARLAPRLLGIENGERTLTDLRHIAQLLDQVALADGLGLTALTRWLADRVRDPASGAVADRSRRLDRDAAAVQIATVHASKGLEFPIVYLPFAWDNAKNPYPGSLLFHDDDGTRVLDVGGPDAPGYAQRKLRCEAEEAGEELRLLYVALTRAKCQVVAWWAPAHSTAAAPLHRMILGRPEGGPHVPDRAPVPADTAAVPMFTAWAEPAGAAISVTAVDTAEAVEIRRVRVEPVTGELAAARFDRSLDLLWRRTSYSALTAGAHDLVTDAEPEDVRGPGDEPETPALLTDEPAATAAPSLMNDLPYGAEFGTLVHGVLERIDTDAPDLAAEVRTRCREAAAELLADLDHGVLATALLAVLRTPLGFGTLADIAARDRLSELEFELPLGGGDTPAARAATLGAIAELVRAHLGPADDLSGYPDLLAGLDDVTLRGYLTGSIDAVLRLPGPKFVVVDYKTNRLGTGDLTVGHYTRERMAAEMLRSHYPLQALLYSVALHRYLRWRLPGYDPARHLGGCRYLFVRGMIGPETPPGHGVFDWDPPVPLVLALSDLLAGAEEDR GT:EXON 1|1-1113:0| BL:SWS:NREP 1 BL:SWS:REP 15->151,273->1106|EX5B_MYCTU|e-120|40.1|941/1094| SEG 74->97|rerardrfvavaaaladpdsaraa| SEG 114->124|alrrtrlltal| SEG 158->175|lvetvddlvvtvaddlyl| SEG 215->232|ervafaaavraeterrkr| SEG 236->254|lrdfddllvllhdvladpd| SEG 259->272|acarvraryrvalv| SEG 407->422|rakvaddlaadlvrll| SEG 431->444|ghgagavrrpvaag| SEG 532->548|aqlrdaarlfaragfaa| SEG 552->564|rlaaqarlaprll| SEG 587->598|aladglgltalt| SEG 614->626|adrsrrldrdaaa| SEG 686->700|lrceaeeageelrll| SEG 713->725|awwapahstaaap| SEG 892->902|eaaaelladld| SEG 905->918|vlatallavlrtpl| BL:PDB:NREP 1 BL:PDB:REP 15->144,273->1108|1w36B|6e-57|33.4|889/1158| RP:PDB:NREP 3 RP:PDB:REP 28->73,273->347|3e1sA|2e-11|16.0|121/517| RP:PDB:REP 445->521|3bm3B|3e-04|9.6|73/256| RP:PDB:REP 567->651|1b77A|9e-05|13.7|73/228| RP:PFM:NREP 1 RP:PFM:REP 26->73,273->347,445->527|PF00580|2e-11|45.3|206/449|UvrD-helicase| HM:PFM:NREP 1 HM:PFM:REP 15->521|PF00580|1.9e-73|28.5|425/533|UvrD-helicase| GO:PFM:NREP 4 GO:PFM GO:0003677|"GO:DNA binding"|PF00580|IPR000212| GO:PFM GO:0004003|"GO:ATP-dependent DNA helicase activity"|PF00580|IPR000212| GO:PFM GO:0005524|"GO:ATP binding"|PF00580|IPR000212| GO:PFM GO:0006281|"GO:DNA repair"|PF00580|IPR000212| RP:SCP:NREP 3 RP:SCP:REP 24->73,273->347|1w36B1|2e-09|48.0|125/469|c.37.1.19| RP:SCP:REP 445->521,627->666|1pjrA2|2e-11|24.7|114/308|c.37.1.19| RP:SCP:REP 805->1108|1w36B3|3e-30|29.9|274/276|c.52.1.24| HM:SCP:REP 25->719|1qhh.1|1.8e-86|30.9|556/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 803->1108|1w36B3|2.6e-67|40.5|274/0|c.52.1.24|1/1|Restriction endonuclease-like| OP:NHOMO 324 OP:NHOMOORG 321 OP:PATTERN -------------------------------------------------------------------- --------------11211-11--1111111111111111----1-------------11--11-----------------------------------------1----1-------------111111-111-----------------------111111--------111111111111----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------111111111111111111111121---------1----1---1---1----111111111-1-11--1111-1--------111-111-1------1--------------------------1111111-1111112111111111111111111-1-11-11-11111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111----------111111111111111-111111111111111-11111111111111111111111111-1111111111111111111111111111----------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 890 STR:RPRED 80.0 SQ:SECSTR ##############EEccGGGccccccHHHHHHHHTccccEEHHHHHHHHHHHHcccHHHHHHHHHHHHHHTcHHHHHHHHHHHHHHHHccccccHHHHHHHHHc###ccH##HHHHHHHHHHHHHGGGccEEEHHHHHHHHHH################################################################################################################################ccGGGccHHHHHHHHTTccTTcEEEEEEcTTcccccccccHHHHHHHHccEcccccHHHHTcHHHHHHHHHHTTcccccTTccTTccccccEEcGTTEEEEETTEEEccEEEEEccccccc#########TTHHHHHHHHHHHHHHHHHHHHHHTTcEEEEETTEEEEccGGcHHHHHHHHHHHHHHHHHHHHTTcccEEcccccccTTccccccccEEEccHHHHHHcGGGHHHHcEEEEEccccTTTHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHTTHHHHHHHcEcccEEEccHHHHHHHHTTccTTcEEEEcTTccEEEEccccEEEEc#TTcccccTTGGcccGGGccccccccccccccEEEEEcHcccc###ccEEEcTTTccEEEccc##cH###HHHHHHHHHHHHHHHHHHHHHHTTE##################EEEEEEEE###cccccccccccccccHHHHHHTccccccHHHHHHHHHEccccccccccccccccccccccccccccccEEEEccccccccccTTHHHHcTTcTTccc#####cccccccccccG#####GGccccHHHHHHHHHHTTcccccccccHHHHHHHHHHTTccGGGHHHHHHHHHHHHccccccccc#cGGGccGGGEEEEEEEEEEEccc###########ccHHHHHHHHHHHcccTccccc####cccccEEEEEEEEEEEEcccc#ccccEEEEcccccccGGG###ccHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHcccccHHHHccccEEEEcccc##cTTcTTcccccccccccHHHHHHHHHHc##### DISOP:02AL 1-2, 781-795, 817-841, 843-856, 1110-1113| PSIPRED cccccccccccccHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHHHccccHHHEEEEEccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHccccEEEEEccccccHHHHHHHHHHHccccEEEEEEcccccEEEEccccHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHHcccccccccccccHHHHccccccccccHHHHHHHEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHccccccEEEEEHHHHccccccEEEEEEcccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEcccccccHHHHHHHHccccccccHHccccccccHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccccccccccHHcccccHHHHHHccccccccccHHHHccccccccHHHHcccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHcccHHccEEccccEEcccccccccHHHHHHHHHHHHHHHHccccHHccccHHHHHcccccEEEEEEEEEEEEEEEEcccEEEEEEEEccccccccccHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHcccEEEEEEEEEccccccccccEEEEcccHHHHHHHHHHHccccccc //