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Nocardia farcinica IFM 10152 (nfar0)
Gene : recC
DDBJ      :recC         putative RecC protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  301/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.37.1c.52.1
:1112 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   28->1024 1w36F PDBj 1e-54 26.0 %
:RPS:SCOP  25->259 1w36C1  c.37.1.19 * 6e-44 25.5 %
:RPS:SCOP  336->770 1w36C2  c.37.1.19 * 5e-30 25.7 %
:RPS:SCOP  803->1028 1w36C3  c.52.1.25 * 1e-41 26.3 %
:HMM:SCOP  2->336 1w36C1 c.37.1.19 * 2.8e-67 34.7 %
:HMM:SCOP  341->784 1w36C2 c.37.1.19 * 1.8e-75 26.2 %
:HMM:SCOP  789->1108 1w36C3 c.52.1.25 * 2.8e-62 34.9 %
:RPS:PFM   29->1023 PF04257 * Exonuc_V_gamma 9e-92 31.1 %
:HMM:PFM   3->1024 PF04257 * Exonuc_V_gamma 5.2e-256 36.5 984/1016  
:BLT:SWISS 25->1028 EX5C_MYCTU 0.0 46.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57392.1 GT:GENE recC GT:PRODUCT putative RecC protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2707545..2710883 GB:FROM 2707545 GB:TO 2710883 GB:DIRECTION + GB:GENE recC GB:PRODUCT putative RecC protein GB:PROTEIN_ID BAD57392.1 LENGTH 1112 SQ:AASEQ MPLHIRRAERADILADALAARLAVPQPDPFAAEVVAVPAKGVERWLTQRLSAVLGVSAGGRDGVAANIRFPSPAALVAEALAACTGIAPEDDPWAHQRVVWTLLRVIDRAVAEPWCAVLARHLGAPSRGRDHRIGRRYATAAQLAALFDSYAAQRPALLLDWAAGGDGDGAGGEVPADLRWQPRLWRMLRAEIGSPSPAERLAPACERLRAEPGLLDLPERLSLFGVTRLTTDQLAVLDAVGAGREVDVWLVHPSPALWSALADRPPARARAADTSASAVRHPLLTGLARDVRELQQRLAGTGAIDTGPLSAPEAPSPQQLSLLAGVQAGIRDDAWPPARLPADGTVQVHACHGPARQVEVLRDCLLGLFAADPTLEPRDVLIMCPEVEAYAPLVRAAFGARGGADEAPESAHPAHLLRVRLADRGRGVTNPLLAVVQTLLELADGRVTVTQVLDLAASETVRRRCGFDDDAIERLREWAAAAGARWGIGQRQRQAFGLADFAQNTLNGAVDRILLGVTADESGDDWLDLALPLDDVDSNDVDLAGRFAEFVDRLAVCLRDLRGPRPATEWAQVLGRALELLTDVPDSQSWVRTEARAEIAAATEHAGDVPLRLADVAVLFADRLAARPTRANFRTGELTVCTMVPMRSVPHRVVVLLGLDDDVFPRTGGVDGDDVLAREPLLGERDPRSEDRQLLLDAVLAARERLLIFHTGADPVTGSPRPPAIPVAELLDVVRAHVGADAMAQVLTRHPLQSFDRRNFDPAAPFSFDTVALAGARAAARVPEPAPPFLPEPLPPAERGDVALADLIAFAEHPVRGFLWQRLGLRVPEHEEDLADALPIELDGLAKWELGERMLAARLTGADPAGLRAAEWRRGTLPPFRLGGAVLDEIEHTVDTLVRVAQPDYAAAPRAVDIAVDLGDGRRLTGTVPEVRGETLVRTTFSRVAAKHRIGAWVALLALAATEDRSWRAVTTGRGKFRRPAWRCELTAPDRPAAVAVLRDLVRLRDEGLTEPLPIAPASSAAYAERRVRGGSAEDAFAAAEREFDGGPNGPDKFGEHTDRHLRYVWGTAPRLDHLAAAPAPAGSPGEPTRFGALAVRLWTPLLAAETQGQP GT:EXON 1|1-1112:0| BL:SWS:NREP 1 BL:SWS:REP 25->1028|EX5C_MYCTU|0.0|46.6|980/1097| SEG 5->23|irraeradiladalaarla| SEG 74->83|aalvaealaa| SEG 157->173|allldwaaggdgdgagg| SEG 260->279|saladrppararaadtsasa| SEG 479->496|waaaagarwgigqrqrqa| SEG 525->538|ddwldlalplddvd| SEG 593->607|rtearaeiaaateha| SEG 654->664|vvvllgldddv| SEG 772->799|valagaraaarvpepappflpeplppae| SEG 1030->1048|rggsaedafaaaerefdgg| SEG 1077->1083|aaapapa| BL:PDB:NREP 1 BL:PDB:REP 28->1024|1w36F|1e-54|26.0|928/1077| RP:PFM:NREP 1 RP:PFM:REP 29->1023|PF04257|9e-92|31.1|953/999|Exonuc_V_gamma| HM:PFM:NREP 1 HM:PFM:REP 3->1024|PF04257|5.2e-256|36.5|984/1016|Exonuc_V_gamma| GO:PFM:NREP 2 GO:PFM GO:0008854|"GO:exodeoxyribonuclease V activity"|PF04257|IPR006697| GO:PFM GO:0009338|"GO:exodeoxyribonuclease V complex"|PF04257|IPR006697| RP:SCP:NREP 3 RP:SCP:REP 25->259|1w36C1|6e-44|25.5|216/347|c.37.1.19| RP:SCP:REP 336->770|1w36C2|5e-30|25.7|424/470|c.37.1.19| RP:SCP:REP 803->1028|1w36C3|1e-41|26.3|213/304|c.52.1.25| HM:SCP:REP 2->336|1w36C1|2.8e-67|34.7|314/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 341->784|1w36C2|1.8e-75|26.2|431/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 789->1108|1w36C3|2.8e-62|34.9|295/0|c.52.1.25|1/1|Restriction endonuclease-like| OP:NHOMO 305 OP:NHOMOORG 303 OP:PATTERN -------------------------------------------------------------------- --------------11111-11--1111111111111111----1-----------------11-----------------------------------------1------------------111111-111-----------------------111111---------111---1-11-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------111111-111111111-1111121---------1----1---1---1----111111111-1-11--1111-1--------111-111-1------1--------------------------1111111-1111112111111111111111111-1-11-------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111111----------111111111111111111111111111---1-11111111111111111111111111-1111111111111111111111111111----------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 929 STR:RPRED 83.5 SQ:SECSTR ###########################cccccccEEcccHHHHHHHHHHHHH########TTccccccccccHHHHHHHHHHHHccccccccTTcHHHHHHHHHHHHHHHccccTTHHHHHHcccccccH#####HHHHHHHHHHHHHHHHTTccHHHHHHHTTTcccTTcccTTHH###HHHHHHHHHHHHTTccHHHHHHHHHHHccTTccc##ccccEEEEEccccccHHHHHHHHHHTTTcEEEEEEEccccccccc##################cccHHHHHHHHHHTTcccEEEEEcccccccccHHHHHHHHHHHTccccccccccTTcEEcc#TTccccEEEEEccHHHHHHHHHHHHHHHHHHcTTccGGGEEEEcTTHHHHHHHHHHHTc##########ccccTTccccEEccEETTTTcHHHHHHHHHTTGGGccccHHHHHHHTTcHHHHHHTTccHHHHHHHHHHHHHHTccccccHHHHHHTTccccccccHHHHHHHHHHHH#ccccTTcccccccccTTccccTHHHHHHHHHHHHHHHHHHHHccccEEHHHHTTHHHHHHHHHc#ccccHHHHHHHHHHHHHHHHHHHHEEcHHH##HHHHHHHHHHHcEEcTTTTccccEEEcccTTccccEEEEEEccccTTTcccccccccccHHHHcccTTcccHHHHHHHHHHHHHHHEEEEEEEEEEcccccccccccccHHHHHHHHHHTTEEcccccHHHEEEccccTTcGGGccccTTccccGGGHHHHTTcccccccccccccccccc####cEEHHHHHHHcccHHHHHHHHTcccccccccccccccccccccHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHTccccHHHHHHHHHHHHHHHHHHHTTccccEE###EEEEEEE###TTEEEEEEEEEEcccEEEEEccccccHHHHHHHHHHHHHHHTccccEEEEEcGGGcEEEEccccHH#######HHHHHHHHHHHHHHHTTTccccccHHHHHHH######################################################################################## DISOP:02AL 1108-1112| PSIPRED ccEEEEEcccHHHHHHHHHHHHHccccccccccEEEEccHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHHcEEEEEEccccHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHcccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccEEEccccccccccccEEEEEEccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHcEEEEEEcccccccccccccHHHHHHHHHHHHHHccHHHHHcccEEcccccccHHHccccccccHHHHHHHHHHHHccccccccccHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccEEEEEEEcccccccEEEEEEcccccHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccc //