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Nocardia farcinica IFM 10152 (nfar0)
Gene : recD
DDBJ      :recD         putative RecD protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  407/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
b.69.7c.37.1
:628 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   127->324,546->623 1w36D PDBj 7e-19 41.2 %
:RPS:PDB   178->324,545->622 3e1sA PDBj 3e-14 38.9 %
:RPS:SCOP  13->324 1w36D1  c.37.1.19 * 1e-19 28.3 %
:RPS:SCOP  495->622 1ve6A1  b.69.7.2 * 3e-17 16.1 %
:HMM:SCOP  126->388 1w36D1 c.37.1.19 * 1.8e-36 30.2 %
:HMM:SCOP  304->628 1w36D2 c.37.1.19 * 1.1e-49 36.3 %
:RPS:PFM   194->294 PF05127 * DUF699 2e-12 51.1 %
:RPS:PFM   555->596 PF01443 * Viral_helicase1 1e-08 50.0 %
:HMM:PFM   557->601 PF01443 * Viral_helicase1 1.7e-08 33.3 45/226  
:HMM:PFM   194->308 PF05127 * DUF699 9.2e-11 25.2 107/174  
:BLT:SWISS 127->324,460->623 EX5A_ECOLI 2e-27 39.0 %
:PROS 463->479|PS00237|G_PROTEIN_RECEP_F1_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57394.1 GT:GENE recD GT:PRODUCT putative RecD protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2714218..2716104 GB:FROM 2714218 GB:TO 2716104 GB:DIRECTION + GB:GENE recD GB:PRODUCT putative RecD protein GB:PROTEIN_ID BAD57394.1 LENGTH 628 SQ:AASEQ MTSIQLAQRGTGLLRTFNEAGVLSAADVHVAVRLGRLGREESELVLFAAALAVRAVRSGSVCLELHRMREIGVDADESWDAGTGIDPASLPWPDVEAVIAALRVSPLVCGGPAGPLCPLRVVPGDDGPLLYLDRYFRQEQTIRRVLTERAASHPRVNAAIVRRELDRLFGADHDGAPDRQRLAAALAATHWTTVVAGGPGTGKTHTIARILALLDAHRRADPKAPPLRIALAAPTGKAAARLQEAVREQAGELGLPELSAATLHRLLGWQRGRRTRFRHNEFNRLPYDVIVVDETSMVSLTMMSSLLAALRPDTRLVLVGDPDQLASVDAGAVLADLVAGPVLGTPNPELDRILGGPPPDLAAHPEGLTALERTRLRSGIVRLTRGRRFGGRIAELAVAVRAGDADRALHLLHTGGDDLSLCAPDDVATVRADVVRAARTVTAAAQAGDATGALTALESHRLLCAHRQGPFGVERWDRLAGEWAAAAGAGPDSAQSSWYPGQPLLVTANDHEARIYNGDTGVIVAMPDGSLRAALQRGSEPYLVHPTQFPAVVTVFAMTIHRSQGSQYDTVSIVLPEPESTLLTRELLYTAITRARGHVRVIGTEESIRAAVGRRVLRASGLSRPAGG GT:EXON 1|1-628:0| BL:SWS:NREP 1 BL:SWS:REP 127->324,460->623|EX5A_ECOLI|2e-27|39.0|342/608| PROS 463->479|PS00237|G_PROTEIN_RECEP_F1_1|PDOC00210| SEG 44->57|lvlfaaalavravr| SEG 182->188|laaalaa| SEG 295->310|tsmvsltmmssllaal| SEG 325->344|lasvdagavladlvagpvlg| SEG 396->409|lavavragdadral| SEG 425->457|ddvatvradvvraartvtaaaqagdatgaltal| SEG 480->490|agewaaaagag| BL:PDB:NREP 1 BL:PDB:REP 127->324,546->623|1w36D|7e-19|41.2|255/538| RP:PDB:NREP 1 RP:PDB:REP 178->324,545->622|3e1sA|3e-14|38.9|204/517| RP:PFM:NREP 2 RP:PFM:REP 194->294|PF05127|2e-12|51.1|90/130|DUF699| RP:PFM:REP 555->596|PF01443|1e-08|50.0|42/220|Viral_helicase1| HM:PFM:NREP 2 HM:PFM:REP 557->601|PF01443|1.7e-08|33.3|45/226|Viral_helicase1| HM:PFM:REP 194->308|PF05127|9.2e-11|25.2|107/174|DUF699| GO:PFM:NREP 1 GO:PFM GO:0004386|"GO:helicase activity"|PF01443|IPR000606| RP:SCP:NREP 2 RP:SCP:REP 13->324|1w36D1|1e-19|28.3|283/348|c.37.1.19| RP:SCP:REP 495->622|1ve6A1|3e-17|16.1|124/313|b.69.7.2| HM:SCP:REP 126->388|1w36D1|1.8e-36|30.2|242/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 304->628|1w36D2|1.1e-49|36.3|245/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 456 OP:NHOMOORG 412 OP:PATTERN -------------------------------------------------------------------- ----2---------11111-11--1111111111111111-2221---------------1-11--1--------------------------------------1-----111111-------1221221123-1--------1-3-11-------11111--2--112--111---1-11-111--------------------------------111-1----------------------------------------------------1111----111----------------------------11111111--11------------1-------1-1----1-2-----1-11---1----1----------------1-------------------2122311--------------------------------11111111121---------------11----------------------------111111111111111111111131---------1----1-1-1---1----111111111-1-11--222111--3----12121111-3-----121-------------------------2111111-1111112111111111111111111-1111--1----11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111111----------1111111111111111111111111111111-11111111111111111111111111-1111111111111111111111111111--1-11111111111111--1------------------------------------1- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--191-------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 357 STR:RPRED 56.8 SQ:SECSTR ##############################################################################################################################ccEEEcccccccccccHHHHHHTTTccGGGEEEcccEEEcTHHHcTTc##cHHHHHHHHHHTTccEEEEEccTTccHHHHHHHHHHHHHTTcccccHHTTccEEEEEccHHHHHHHHHHHTHHHHHccHHTccEEEHHHHTTEET##TTEEcccccccccccEEEEccGGGccHHHHHHHHTTccTTcEEEEEEcTTc########################################################################################################################################EEEEcccccTTcHHHHHHHHHHHHccccccEEccccEEcTTcEEEEccccccEEEccHHHHHHHHTEcTTccEEEEccccEEEccGGGGTTEEEccEEEHHHHTTccEEEEEEEEcGGGGGGccHHHHHHHHHTEEEEEEEEEcHHHHHHHHcccccccccHH##### DISOP:02AL 149-158| PSIPRED cccHHHccccHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccEEEEEcccccEEEEHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHcccccEEEEEccHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHccccccEEccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHEEEEEcccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEcccccccccccEEEEEccccEEEEEEEEcccEEEEEHHHcccccEEEEEEEHHHccccccEEEEEEcccccccccccHHHHEEEEEEEEEEEEEcHHHHHHHHHHHHcccccHHHHccc //