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Nocardia farcinica IFM 10152 (nfar0)
Gene : recF
DDBJ      :recF         putative recombination and repair protein
Swiss-Prot:RECF_NOCFA   RecName: Full=DNA replication and repair protein recF;

Homologs  Archaea  1/68 : Bacteria  621/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:388 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->328 2o5vA PDBj 5e-24 34.6 %
:RPS:PDB   1->201 1e69A PDBj 2e-07 15.9 %
:RPS:SCOP  1->62 1ii8.1  c.37.1.12 * 1e-10 22.6 %
:HMM:SCOP  1->348 1w1wA_ c.37.1.12 * 1.4e-35 28.9 %
:RPS:PFM   3->138 PF02463 * SMC_N 6e-05 29.6 %
:HMM:PFM   3->355 PF02463 * SMC_N 2.2e-20 26.9 175/220  
:BLT:SWISS 1->388 RECF_NOCFA 0.0 100.0 %
:PROS 117->137|PS00617|RECF_1
:PROS 323->341|PS00618|RECF_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54845.1 GT:GENE recF GT:PRODUCT putative recombination and repair protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 4063..5229 GB:FROM 4063 GB:TO 5229 GB:DIRECTION + GB:GENE recF GB:PRODUCT putative recombination and repair protein GB:PROTEIN_ID BAD54845.1 LENGTH 388 SQ:AASEQ MFVRALSLRDFRSWEHVELELSTGRTVFLGANGNGKTNLLEAVGYLATLGSHRVSADAPLIRSGAQRARVGANVVNAGRELRIDVELNQGSANRAQINRSPVRRTREILGILQTVLFAPEDLALVRGDPGERRRFLDELCTARLPRLAGVRADYDRVLRQRSALLKTAGRHARSTADLSTLDVWDGHLAGHAAVLVAQRLRLVHDLFPYLAEAYRSLAPESRPAAIGYRSAYLPGEFLDPARAPRDDDAAALEEIILRELAAARRKELERGVCLVGPHRDELELMLGDTPAKGFASHGESWSFALALRLASFDLLRSTSAEPVLLLDDVFAELDRRRRTALAAVAADAEQVLITAAVPEDVPAELSATPIRVATAGEAGHRTSHIVTG GT:EXON 1|1-388:0| SW:ID RECF_NOCFA SW:DE RecName: Full=DNA replication and repair protein recF; SW:GN Name=recF; OrderedLocusNames=NFA_30; SW:KW ATP-binding; Complete proteome; Cytoplasm; DNA damage; DNA repair;DNA replication; DNA-binding; Nucleotide-binding; SOS response. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->388|RECF_NOCFA|0.0|100.0|388/388| GO:SWS:NREP 8 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| GO:SWS GO:0006260|"GO:DNA replication"|DNA replication| GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0009432|"GO:SOS response"|SOS response| PROS 117->137|PS00617|RECF_1|PDOC00539| PROS 323->341|PS00618|RECF_2|PDOC00539| SEG 239->251|dparaprdddaaa| SEG 331->349|aeldrrrrtalaavaadae| BL:PDB:NREP 1 BL:PDB:REP 5->328|2o5vA|5e-24|34.6|292/358| RP:PDB:NREP 1 RP:PDB:REP 1->201|1e69A|2e-07|15.9|201/263| RP:PFM:NREP 1 RP:PFM:REP 3->138|PF02463|6e-05|29.6|135/536|SMC_N| HM:PFM:NREP 1 HM:PFM:REP 3->355|PF02463|2.2e-20|26.9|175/220|SMC_N| GO:PFM:NREP 2 GO:PFM GO:0005524|"GO:ATP binding"|PF02463|IPR003395| GO:PFM GO:0005694|"GO:chromosome"|PF02463|IPR003395| RP:SCP:NREP 1 RP:SCP:REP 1->62|1ii8.1|1e-10|22.6|62/369|c.37.1.12| HM:SCP:REP 1->348|1w1wA_|1.4e-35|28.9|305/0|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 625 OP:NHOMOORG 622 OP:PATTERN ----------------------------------------------------------------1--- ----111111111111112-111111111111111111111111111111111111111111111111111111111111111-----111111111--111111111111111111111----11111111111111111---1111111111111111111111111111111111111111111122-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1-1---111-11-111-----------1111111-11---------11--11--111111111111111-111111--11111111-11111---------------1--1-1-----------11-11-----------------------------------------------------------------------1--------------111111111--1-11-----------------------------11-111111111111111111111111111---1-11------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111---11-1------1-1--1111111111-1--111111111111111111-11-111--111---------11111-----11---11111111111111--11111111---1-111111-------------------------1----------11 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 308 STR:RPRED 79.4 SQ:SECSTR cEEEEEEEEccTTccccEEEEccccEEEEccTTTccTHHHHHHHHTcccccTTcccccTTccccEEEEEEEEEccccEEEEEETTccEEEEETTEEEcHHHHHHHTTTccTTTTcccEEEHHHHHHHHTccHHHHHHHHHHHHHHHTccEEEcccEEEHHHHHHHHHHHHTTTccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcc#ccEEEEEEccccT###################TTHHHHHHHTHHHHHHHTcccccGGGcEEEEEETTEEHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcc############################################################ DISOP:02AL 386-388| PSIPRED cEEEEEEEEEEEEEEEEEEEccccEEEEEccccccHHHHHHHHHHHHccccccccccHHHHHccccEEEEEEEEEEcccEEEEEEEEEEcccEEEEEccccHHHHHHHHHHHHHEEEccccHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccccEEEEccccHHHHccccHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHcccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHcccHHHEEEEEcccccEEEEEcc //