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Nocardia farcinica IFM 10152 (nfar0)
Gene : recO
DDBJ      :recO         putative DNA repair protein
Swiss-Prot:RECO_NOCFA   RecName: Full=DNA repair protein recO;AltName: Full=Recombination protein O;

Homologs  Archaea  0/68 : Bacteria  164/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.40.4g.45.1
:256 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->196 1w3sB PDBj 1e-07 31.6 %
:RPS:SCOP  1->79 1u5kA1  b.40.4.13 * 2e-19 27.6 %
:RPS:SCOP  86->239 1u5kA2  g.45.1.2 * 1e-14 17.9 %
:HMM:SCOP  1->79 1u5kA1 b.40.4.13 * 2.6e-24 50.0 %
:HMM:SCOP  82->233 1u5kA2 g.45.1.2 * 3.3e-41 34.9 %
:RPS:PFM   3->76 PF11967 * RecO_N 7e-16 45.9 %
:HMM:PFM   1->79 PF11967 * RecO_N 1.4e-30 48.1 79/80  
:HMM:PFM   86->237 PF02565 * RecO_C 4.4e-21 25.9 112/118  
:BLT:SWISS 1->256 RECO_NOCFA e-141 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56297.1 GT:GENE recO GT:PRODUCT putative DNA repair protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1634865..1635635 GB:FROM 1634865 GB:TO 1635635 GB:DIRECTION + GB:GENE recO GB:PRODUCT putative DNA repair protein GB:PROTEIN_ID BAD56297.1 LENGTH 256 SQ:AASEQ MRLYRDEAVVVRQHKLGEADRIVTLLTRQHGLVRAVAKGVRRTRSRFGARLEPFSYIDVQLHPGRNLDTVTQVHTVESFAADIIDDYGRYTTACAILETAERLAGEERAPAPKLHALTASALRAIAAKQRPHELVLDAYLLRAMRFAGWAPALDECAKCATPGPHRAFHVAAGGAVCVHCRPPGAATPAPGVLDHLVALARGEWAGIEAVPESTRKQASGLVAAHLQWHLERQLRTLPLIERSGPARDAATAGHAG GT:EXON 1|1-256:0| SW:ID RECO_NOCFA SW:DE RecName: Full=DNA repair protein recO;AltName: Full=Recombination protein O; SW:GN Name=recO; OrderedLocusNames=NFA_14520; SW:KW Complete proteome; DNA damage; DNA recombination; DNA repair. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->256|RECO_NOCFA|e-141|100.0|256/256| GO:SWS:NREP 3 GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006310|"GO:DNA recombination"|DNA recombination| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| SEG 116->127|altasalraiaa| BL:PDB:NREP 1 BL:PDB:REP 9->196|1w3sB|1e-07|31.6|171/231| RP:PFM:NREP 1 RP:PFM:REP 3->76|PF11967|7e-16|45.9|74/78|RecO_N| HM:PFM:NREP 2 HM:PFM:REP 1->79|PF11967|1.4e-30|48.1|79/80|RecO_N| HM:PFM:REP 86->237|PF02565|4.4e-21|25.9|112/118|RecO_C| RP:SCP:NREP 2 RP:SCP:REP 1->79|1u5kA1|2e-19|27.6|76/78|b.40.4.13| RP:SCP:REP 86->239|1u5kA2|1e-14|17.9|151/157|g.45.1.2| HM:SCP:REP 1->79|1u5kA1|2.6e-24|50.0|76/0|b.40.4.13|1/1|Nucleic acid-binding proteins| HM:SCP:REP 82->233|1u5kA2|3.3e-41|34.9|149/0|g.45.1.2|1/1|ArfGap/RecO-like zinc finger| OP:NHOMO 164 OP:NHOMOORG 164 OP:PATTERN -------------------------------------------------------------------- ----111111111111111-111111111111111111111111111111111111111111111111111111111111111-------------------------1----------------1----------111111111111111111111------1--11111---------------------11----------------11111--1111111-11111111-------------------------------------------------------------------------------------------1----1--------1-------1-1--1-11111111111-1111----11------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11-----------111-1111-----11-1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 181 STR:RPRED 70.7 SQ:SECSTR ########EEEEEEEcccccEEEEEEETT#EEEEEEEccc#cTTcTccTTccTTcEEEEEEEcccccccEEEEEEEEEEccGGGGcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHTTccccccccTTTccccccEE#cTTTccEEcTTT####cccccHHHHHHH############################################################ DISOP:02AL 247-256| PSIPRED cccEEccEEEEEEcccccccEEEEEEccccccEEEEEEcccccccccHHHHcccEEEEEEEEEcccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHcccccccccccEEEEccccEEEccccccccccccHHHHHHHHHHHHccHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccc //