[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : recQ
DDBJ      :recQ         putative ATP-dependent DNA helicase
Swiss-Prot:             

Homologs  Archaea  12/68 : Bacteria  614/915 : Eukaryota  194/199 : Viruses  1/175   --->[See Alignment]
c.37.1
:541 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->356,437->475 1oyyA PDBj 1e-63 39.8 %
:RPS:PDB   11->348 3bxzB PDBj 6e-29 13.1 %
:RPS:SCOP  5->195 1oywA2  c.37.1.19 * 1e-47 43.2 %
:RPS:SCOP  236->344 2fwrA1  c.37.1.19 * 3e-15 17.3 %
:HMM:SCOP  58->354 1wp9A2 c.37.1.19 * 5.4e-54 29.9 %
:RPS:PFM   24->88 PF00270 * DEAD 6e-04 30.8 %
:RPS:PFM   260->329 PF00271 * Helicase_C 2e-06 34.3 %
:HMM:PFM   259->331 PF00271 * Helicase_C 1.2e-23 39.7 73/78  
:HMM:PFM   22->182 PF00270 * DEAD 3.5e-18 23.8 151/167  
:HMM:PFM   497->528 PF12073 * DUF3553 2.6e-06 31.2 32/52  
:BLT:SWISS 8->356,437->475 RECQ_SALTY 4e-68 40.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55138.1 GT:GENE recQ GT:PRODUCT putative ATP-dependent DNA helicase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(309323..310948) GB:FROM 309323 GB:TO 310948 GB:DIRECTION - GB:GENE recQ GB:PRODUCT putative ATP-dependent DNA helicase GB:PROTEIN_ID BAD55138.1 LENGTH 541 SQ:AASEQ MTTAARLRRIAEQTFGLPHLYDEQLRAMELVLAGHDVLAVLPSGGGKSAIYQVPALLLDGPTVVVSPLIALQHDQMEGIEETDAPPAVALNSAQRGRARREAWAALRRGDARYVFLSPEQLAKPEVVDALAELGVALFAVDEAHCISAWGHDFRPDYLRLGEVRERLGGPRVIALTATAAAPVRRDIVERLGMRDHREVVTSFDRPNLFLAAHRFTSEADKHAAALARVGELAAENRCGLVYTASRSGADRFARDLAGTGVRTARYHAGMKAADRERVHQDFLADTVDVVVATSAFGMGIDKPGVRFVVHASVPDSLDSYYQQIGRAGRDGEPARAELYYRPEDLSLQRFLTTNKPPADTLEAVARALARHPLPPRRLAEAVDAPPARRTRAINLLEQIGALTTTADGRLGFTTDLTPDEAADQAHRAADAHETLIRSRLDMLRGYAETTDCRRRFLLEYFGERLPQRCGNCDTCAAGTAERRTGEAADFPADARVTHPEWGAGVVLSAHEDHLTVLFDDYGYKTLSLTQVRERDLLTRID GT:EXON 1|1-541:0| BL:SWS:NREP 1 BL:SWS:REP 8->356,437->475|RECQ_SALTY|4e-68|40.8|382/609| SEG 93->108|aqrgrarreawaalrr| SEG 223->235|aaalarvgelaae| SEG 284->293|adtvdvvvat| SEG 365->379|aralarhplpprrla| SEG 419->433|deaadqahraadahe| BL:PDB:NREP 1 BL:PDB:REP 8->356,437->475|1oyyA|1e-63|39.8|378/512| RP:PDB:NREP 1 RP:PDB:REP 11->348|3bxzB|6e-29|13.1|336/440| RP:PFM:NREP 2 RP:PFM:REP 24->88|PF00270|6e-04|30.8|65/167|DEAD| RP:PFM:REP 260->329|PF00271|2e-06|34.3|70/76|Helicase_C| HM:PFM:NREP 3 HM:PFM:REP 259->331|PF00271|1.2e-23|39.7|73/78|Helicase_C| HM:PFM:REP 22->182|PF00270|3.5e-18|23.8|151/167|DEAD| HM:PFM:REP 497->528|PF12073|2.6e-06|31.2|32/52|DUF3553| GO:PFM:NREP 6 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 2 RP:SCP:REP 5->195|1oywA2|1e-47|43.2|190/206|c.37.1.19| RP:SCP:REP 236->344|2fwrA1|3e-15|17.3|104/200|c.37.1.19| HM:SCP:REP 58->354|1wp9A2|5.4e-54|29.9|271/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1770 OP:NHOMOORG 821 OP:PATTERN 11-----------------------------------------11221-1111-----------1--- 113-2--1111----------1---3------12223111-31331211331222211--2211312222-11111111122------333413222--22323222322---------------1--12111211-111----112222322111111111121122333-1-----1----3111-----12222222322222222212222222111221122222222322222222222222222222121221111122112221211-111---------------------------------------------11121111111212-111122211-1--11--4221-------1---1-2-51111-----111111--11111------------11112111121-1111121111111112121121222111111111111111111------------------------------1112-111111111111111122221111111111211-1111112111212211121211111111111311111211-1-11-21----111-111211111321---------------------1---111221221312221322222222221222222----1-1------11111111222112111-11112211211-1111111111111211111111111111111111211121-111111111111----11111111122112111111111111111----------1112112222211112214---------12222111112222211111111111111--2-222222--------21--------------------------1--11------12 2223333-622233223331222222222222222222221222223322316633282222211111-12211111-1111111111-26335CF333335222313C3P38467A5555555AA564Bd8-76944448357635443844B37466436576F3535S55F53475X4446665573865447683 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- STR:NPRED 438 STR:RPRED 81.0 SQ:SECSTR ###HHHHHHHHHHHHHHTcccccHHHHHHHHHTTTTEEEEccTTccHHHHTHHHHTTccccEEEEEccHHHHHHHHHTTHHHHHHTTcHcEEEccTTccHHHHHHHHHccEEEEEHHHHHHHTcccGGGcccccccEEEEETHHHHHTTcccccEEccEEccTTTGGGcccEEEEEEccccTTccHHHHHcccEEEEcccccccccEEcccEEEccHHHHHHHHHHHHHHHHHHTccEHEEEcccHHHHHHHHHHHHHTcccccEEccccHHHHHHHHTTTTccccEEEEcTTccTTccccTTccTHEEEccccccTTHHHHHHHTccGGGcccEEEEEEEHHHHcccHHHHHHHHHHHHHTTcccTTcccccccGGGGGGccccTTTTcccHHHHHHHHHH##################################HHHHHHHHHHHTccccHHHHHHHHHTccccccccccHHH################################################################## DISOP:02AL 356-368| PSIPRED cccHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHccccEEEEEccHHHHHHHHHccccccccEEEEEEcHHHHHHcccccHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHccccEEEEEccccccEEEEEEEEEEcccHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHcccccEEEEEcHHHcccccccccEEEEEcccccHHHHcEEccccccccccEEEEEEEcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHccccccEEEcccHHHHHHHcc //