[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : rfbB
DDBJ      :rfbB         putative dTDP-glucose-4,6-dehydratase
Swiss-Prot:             

Homologs  Archaea  66/68 : Bacteria  813/915 : Eukaryota  172/199 : Viruses  3/175   --->[See Alignment]
c.2.1
:340 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->318 1kerB PDBj e-124 63.3 %
:RPS:PDB   2->318 1bxkA PDBj 7e-43 43.7 %
:RPS:SCOP  2->318 1bxkA  c.2.1.2 * 3e-81 49.8 %
:HMM:SCOP  1->333 1kepA_ c.2.1.2 * 2.2e-86 33.6 %
:RPS:PFM   3->237 PF01370 * Epimerase 3e-39 42.1 %
:HMM:PFM   4->238 PF01370 * Epimerase 2.9e-70 39.7 229/238  
:BLT:SWISS 3->318 RMLB_STRMU e-121 62.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55052.1 GT:GENE rfbB GT:PRODUCT putative dTDP-glucose-4,6-dehydratase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 219808..220830 GB:FROM 219808 GB:TO 220830 GB:DIRECTION + GB:GENE rfbB GB:PRODUCT putative dTDP-glucose-4,6-dehydratase GB:PROTEIN_ID BAD55052.1 LENGTH 340 SQ:AASEQ MRLLVTGGAGFIGANFVQQTVAERPDATVTVLDALTYAGNRASLAPVADRIDFVHGDIADLDLVDELVSGVDAVVHFAAESHNDNSLAEPWPFVQTNIVGTYSLLQAVRRHDVRYHHVSTDEVYGDLTAEQPPFTETTAYNPSSPYSATKASSDLLVRAWTRSFGVRATISNCSNNYGPYQHVEKFIPRQITNLIDGVRPRLYGAGHQIRDWIHVHDHNRAVWDILERGRIGQTYLIGANGELDNKSVVRMLLEAFGRDPDDFDHVTDRPGHDQRYAIDATLLRTELGWTPRYADFRAGLAATIDWYRANESWWRPMKAATERAYAAAGEQTLTQVPGTD GT:EXON 1|1-340:0| BL:SWS:NREP 1 BL:SWS:REP 3->318|RMLB_STRMU|e-121|62.7|316/348| SEG 319->328|aaterayaaa| BL:PDB:NREP 1 BL:PDB:REP 3->318|1kerB|e-124|63.3|316/347| RP:PDB:NREP 1 RP:PDB:REP 2->318|1bxkA|7e-43|43.7|316/341| RP:PFM:NREP 1 RP:PFM:REP 3->237|PF01370|3e-39|42.1|228/232|Epimerase| HM:PFM:NREP 1 HM:PFM:REP 4->238|PF01370|2.9e-70|39.7|229/238|Epimerase| GO:PFM:NREP 3 GO:PFM GO:0003824|"GO:catalytic activity"|PF01370|IPR001509| GO:PFM GO:0044237|"GO:cellular metabolic process"|PF01370|IPR001509| GO:PFM GO:0050662|"GO:coenzyme binding"|PF01370|IPR001509| RP:SCP:NREP 1 RP:SCP:REP 2->318|1bxkA|3e-81|49.8|315/341|c.2.1.2| HM:SCP:REP 1->333|1kepA_|2.2e-86|33.6|330/346|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 4215 OP:NHOMOORG 1054 OP:PATTERN 11111-32444345512312134293347642276226152226836967665133322332223-13 58A4722433422234555-552264666664344423354B9823112453654311116421867747333332231321826864888617221--32444658A77--------------234654864754BCCBD-11C6B7787794344653465576987863544236764373231121423544545684546556636554444835223431112116A2111111111111113---1611144233133522433522322222322333232122132122131111111111111211333111232-9455556654456-443231416--411213396652333121223159A5566-----55CD96527468C44544455545-889E8EAA69515665DI6CHCCB73653444A7A934-4444444443445C76-----------------------------23343-37643755447544445559555525457564323331932332433123337442442232232344563263964897858786978686B3776776C78333212323321311323224133176556335433134255333233344522233--16434------34443444443443453-4544353443443234434534234334255545444354553444244444-411121111222--1-54555122263552111111111112222311111233371545466833455636562333223332312322222-32-2353434422233231-856688881111-1112------------1-1---13-1-----1-33521221585 1122314-31214672211-12-3131---111111-1-1111---2112353411212111311-1--2--1-2-1---11112122-13122321112211658-3F4C243342211212222232472-221222-31222123222212-22234534432-334G49538445*C8855IHON1M95698878 -----------------------2--------------------------------------------------------------------------------------------------------------------------------------------------11--- STR:NPRED 337 STR:RPRED 99.1 SQ:SECSTR cEEEEETTTcHHHHHHHHHHHHHcccEEEEEccccTTccGGGTTTTTTcTTEEEEcccTTcHHHHHHHHcccEEEEcccccccccccccccHHHHHHTHHHHHHHHHHHHHHHTEEEEEEGGGGcccccccccccTTcccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEcEEEcTTccTTcHHHHHHHHHHTTccEEccTTcccEEcEEEHHHHHHHHHHHHHHccTTcEEEEcccccEEHHHHHHHHHHHHHHHcccTTcccGGGGEEcccccccHHHHHHTccccccHcHHHHHHHHHHHHHHcHHHHHHHHcccTTTTcccccccccccc### DISOP:02AL 322-340| PSIPRED cEEEEEccccHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHcccEEEEEEcccHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccHHHHHHHHHHccccEEEEEccccEEEEEEHHHHHHHHHHHHHccccccEEEEcccccEEHHHHHHHHHHHHcccccEEEEcccccccHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccc //