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Nocardia farcinica IFM 10152 (nfar0)
Gene : rfbC
DDBJ      :rfbC         putative dTDP-6-deoxy-4-ketoglucose epimerase
Swiss-Prot:             

Homologs  Archaea  37/68 : Bacteria  491/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
b.82.1
:182 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->181 1pm7A PDBj 1e-55 55.9 %
:RPS:PDB   1->181 2c0zA PDBj 4e-33 49.4 %
:RPS:SCOP  1->181 1nxmA  b.82.1.1 * 6e-42 28.6 %
:HMM:SCOP  1->182 1dzrA_ b.82.1.1 * 1.4e-63 48.3 %
:RPS:PFM   5->179 PF00908 * dTDP_sugar_isom 1e-33 43.7 %
:HMM:PFM   4->181 PF00908 * dTDP_sugar_isom 3.1e-61 46.8 173/177  
:BLT:SWISS 3->179 STRM_STRGR 4e-30 41.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55048.1 GT:GENE rfbC GT:PRODUCT putative dTDP-6-deoxy-4-ketoglucose epimerase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(215949..216497) GB:FROM 215949 GB:TO 216497 GB:DIRECTION - GB:GENE rfbC GB:PRODUCT putative dTDP-6-deoxy-4-ketoglucose epimerase GB:PROTEIN_ID BAD55048.1 LENGTH 182 SQ:AASEQ MEIRELSIPGAWVVTPRVFHDERGSFAEAFKASEFEKATGRPMDLRQVNCSVSAAGVLRGIHYTENPPGQAKYVTCVRGAFLDVVVDLRRGSPTYGRWDSVLLDDVDRRSVFVSEGLGHAILSLEDDSTVTYLCSLEYTPELDGEIDAFDPTLAIEWPRTGRDGRPLTYLRSPKDTAAPPFS GT:EXON 1|1-182:0| BL:SWS:NREP 1 BL:SWS:REP 3->179|STRM_STRGR|4e-30|41.2|170/200| SEG 25->38|sfaeafkasefeka| BL:PDB:NREP 1 BL:PDB:REP 1->181|1pm7A|1e-55|55.9|177/199| RP:PDB:NREP 1 RP:PDB:REP 1->181|2c0zA|4e-33|49.4|174/199| RP:PFM:NREP 1 RP:PFM:REP 5->179|PF00908|1e-33|43.7|167/172|dTDP_sugar_isom| HM:PFM:NREP 1 HM:PFM:REP 4->181|PF00908|3.1e-61|46.8|173/177|dTDP_sugar_isom| GO:PFM:NREP 2 GO:PFM GO:0008830|"GO:dTDP-4-dehydrorhamnose 3,5-epimerase activity"|PF00908|IPR000888| GO:PFM GO:0009103|"GO:lipopolysaccharide biosynthetic process"|PF00908|IPR000888| RP:SCP:NREP 1 RP:SCP:REP 1->181|1nxmA|6e-42|28.6|168/194|b.82.1.1| HM:SCP:REP 1->182|1dzrA_|1.4e-63|48.3|176/183|b.82.1.1|1/1|RmlC-like cupins| OP:NHOMO 685 OP:NHOMOORG 536 OP:PATTERN 11----111111212111-1--1---------111--1-1-1-1-1-111111-1-1--111-11--- 1---1------11111211-1111121111112111112212231--1-111------1122--212112--------1-1-1-2-11243211111--11111111111--------------11111131111211111---1-2112222--22111-11-2132221-1-1-1-111-2-----1-1---1111111111111111-----111----------1---2--------------------1---12111-111--21-1---1--------------------------------------------------12111---12-3-----12-1-2---1--1-221-------1----1---2112-----11-2231212111--11-111112-32233222112112231132322222211111212211-1111111131111231-------------------------------12--111111121221111111311-111112321211122111111111112111111111-112221111111-1221-311111111---1---2211-11-111--------1--------------11121111---2-11221122221122111221---11-2--------11-1-1---11-111--11-----1--1-11111-2--1----1-11111111-1111--111111---1---------------111111111111-11--1-----------------111-21111111211212312111--------1311-------11-111121221111111--12--1111----------------------------------------11--1-11- -------------1----------------------------------------------------------------------------------------------2-2------------------------------------------------------------112----1---------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 181 STR:RPRED 99.5 SQ:SECSTR cEEEEcccTTEEEEEcEEEEETTEEEEEcccHHHHHHHHcccccccEEEEEEEETTcEEEEEEEcTTTcccEEEEEEEcEEEEEEEEcccTcTTTTcEEEEEEETTTccEEEEcTTEEEEEEEcccEEEEEEEEcccccTTTEEEccTTcTTTcccccccccccccccccccHHHHTcccH# DISOP:02AL 181-182| PSIPRED cEEEEcccccEEEEccEEccccccEEEEHHcHHHHHHHccccccEEEEEEEEcccccEEEEEEEccccccccEEEEEEEEEEEEEEEEEcccccccEEEEEEEcccccEEEEEcccEEEEEEEEccccEEEEEcccccccccccEEccccccccccccccccccccccEEEcHHHHcccccc //