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Nocardia farcinica IFM 10152 (nfar0)
Gene : rho
DDBJ      :rho          putative transcription termination factor Rho
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  783/915 : Eukaryota  13/199 : Viruses  0/175   --->[See Alignment]
a.140.3a.140.4a.35.1b.40.4c.37.1
:681 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   308->667 1pvoB PDBj e-104 57.2 %
:RPS:PDB   295->668 2ck3D PDBj 1e-69 21.0 %
:RPS:SCOP  33->83 1e7dA1  a.140.4.1 * 5e-07 13.7 %
:RPS:SCOP  306->383 1a62A2  b.40.4.5 * 3e-12 40.3 %
:RPS:SCOP  375->621 1bmfD3  c.37.1.11 * 1e-54 23.0 %
:RPS:SCOP  600->671 1x2lA1  a.35.1.7 * 2e-09 18.8 %
:HMM:SCOP  38->84 1a62A1 a.140.3.1 * 3.8e-05 40.4 %
:HMM:SCOP  341->627 1e79A3 c.37.1.11 * 1.6e-72 37.7 %
:RPS:PFM   43->80 PF07498 * Rho_N 2e-04 55.3 %
:RPS:PFM   307->383 PF07497 * Rho_RNA_bind 1e-15 56.3 %
:RPS:PFM   415->614 PF00006 * ATP-synt_ab 4e-14 31.9 %
:HMM:PFM   414->618 PF00006 * ATP-synt_ab 6.3e-45 26.0 200/215  
:HMM:PFM   307->383 PF07497 * Rho_RNA_bind 7.4e-17 38.0 71/78  
:HMM:PFM   43->81 PF07498 * Rho_N 3.3e-15 46.2 39/43  
:BLT:SWISS 1->96,296->681 RHO_MYCLE 0.0 89.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55897.1 GT:GENE rho GT:PRODUCT putative transcription termination factor Rho GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1161577..1163622 GB:FROM 1161577 GB:TO 1163622 GB:DIRECTION + GB:GENE rho GB:PRODUCT putative transcription termination factor Rho GB:PROTEIN_ID BAD55897.1 LENGTH 681 SQ:AASEQ MTDTDLLATPGVDSNPSSSGGRESESGQISKMSEHTDVARSGLTGMLLPQLRALAGELGIRGTSGMRKGDLIAAIKENQAGRAAKADKPARSEAKSEQTALDVQPAKDKTAPAESKAAEVKDAAPTAQAAAPTQAPAAAPERSAESAPAESGAGEGKTAEGKAAESGEDTGRESGQRGRGRQRRGRDQARSGGGENAEAQESKTDADQGERRRDRNQGDRQGQGERAQQGERAQNAEQRNQNAGGRNDGGRNDGGRTDGRGGDDEEGGRGRRGRRFRERRRGRDRESGGGESRELEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLVRKNGLRRGDAITGAVRAPRDGEQGNQRQKFDPLVRLDTVNGGDVEAAKRRPEFGKLTPLYPNQRLRLETTPNKLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIATNNPECYLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEMGKDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEAAVLHKLRRVLSGLDSHQAIDLLIDRLKKSKNNLEFLMQVSKTAPGALDE GT:EXON 1|1-681:0| BL:SWS:NREP 1 BL:SWS:REP 1->96,296->681|RHO_MYCLE|0.0|89.1|480/610| SEG 17->27|sssggresesg| SEG 123->168|aaptaqaaaptqapaaapersaesapaesgagegktaegkaaesge| SEG 171->194|gresgqrgrgrqrrgrdqarsggg| SEG 207->234|dqgerrrdrnqgdrqgqgeraqqgeraq| SEG 244->294|ggrndggrndggrtdgrggddeeggrgrrgrrfrerrrgrdresgggesre| BL:PDB:NREP 1 BL:PDB:REP 308->667|1pvoB|e-104|57.2|348/358| RP:PDB:NREP 1 RP:PDB:REP 295->668|2ck3D|1e-69|21.0|367/467| RP:PFM:NREP 3 RP:PFM:REP 43->80|PF07498|2e-04|55.3|38/42|Rho_N| RP:PFM:REP 307->383|PF07497|1e-15|56.3|71/75|Rho_RNA_bind| RP:PFM:REP 415->614|PF00006|4e-14|31.9|188/212|ATP-synt_ab| HM:PFM:NREP 3 HM:PFM:REP 414->618|PF00006|6.3e-45|26.0|200/215|ATP-synt_ab| HM:PFM:REP 307->383|PF07497|7.4e-17|38.0|71/78|Rho_RNA_bind| HM:PFM:REP 43->81|PF07498|3.3e-15|46.2|39/43|Rho_N| GO:PFM:NREP 6 GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07498|IPR011112| GO:PFM GO:0006353|"GO:transcription termination"|PF07498|IPR011112| GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07497|IPR011113| GO:PFM GO:0003723|"GO:RNA binding"|PF07497|IPR011113| GO:PFM GO:0006353|"GO:transcription termination"|PF07497|IPR011113| GO:PFM GO:0005524|"GO:ATP binding"|PF00006|IPR000194| RP:SCP:NREP 4 RP:SCP:REP 33->83|1e7dA1|5e-07|13.7|51/54|a.140.4.1| RP:SCP:REP 306->383|1a62A2|3e-12|40.3|72/78|b.40.4.5| RP:SCP:REP 375->621|1bmfD3|1e-54|23.0|243/276|c.37.1.11| RP:SCP:REP 600->671|1x2lA1|2e-09|18.8|64/87|a.35.1.7| HM:SCP:REP 38->84|1a62A1|3.8e-05|40.4|47/0|a.140.3.1|1/1|Rho termination factor, N-terminal domain| HM:SCP:REP 341->627|1e79A3|1.6e-72|37.7|268/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1510 OP:NHOMOORG 798 OP:PATTERN --------------------------------------------------11---------------- 1122211111111111111-111111111111111111112111311121121211111111212112221111111112121223221111111111111111111131222222222222222111111111113332211-12-----------------1-------------------11111111222222222222222222212212222222222223322222111111111111111111111----------11-----11--------------------------------------------------22223222222232322222222222111211211222222222222211323211221111224222222322322222222122-33333233331232223342222221222222232222211111111111212322222222211111111111111111111111122112221433354333312232444514123322211223223111213312223221521111111222122223222322223333322222232333331312222122222222222222222221112312222221324232423222322333321-1222211211132133242442222222-43223322224241221121113343344444444444444442122322352455555445454113111111222211514111111111111111111-1111112133232222322222343111111111221132222234211223333333411-111222222112222222222---------1-----------1----2122222222132 -----------------------------------------------1--------1---------------11------------1--1-1-----------153----------------------------------------------------2--------------------------1--------2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 9-302, 677-681| PSIPRED cccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccHHcHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccHHHHHcccccccccccccccccccccHHHcccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccEEEEEcccccccEEEcccccHHcccHHHcccccccccccEEEEEEcccccccccccEEEEEEEEccccccEEcccEEEcccEEEccccccccccccEEEEcccccccHHHHcccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccEEEEEEEEEEccccccccHHHHHHHHHccEEEEEEHHHHHccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccc //