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Nocardia farcinica IFM 10152 (nfar0)
Gene : rph
DDBJ      :rph          putative RNase PH
Swiss-Prot:RNPH_NOCFA   RecName: Full=Ribonuclease PH;         Short=RNase PH;         EC=2.7.7.56;AltName: Full=tRNA nucleotidyltransferase;

Homologs  Archaea  26/68 : Bacteria  603/915 : Eukaryota  21/199 : Viruses  0/175   --->[See Alignment]
d.101.1d.14.1
:257 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->248 3b4tA PDBj e-116 84.4 %
:RPS:PDB   3->248 3b4tC PDBj 3e-65 84.2 %
:RPS:SCOP  4->142 2ba0D1  d.14.1.4 * 1e-35 32.8 %
:RPS:SCOP  157->244 1oypA2  d.101.1.1 * 9e-21 52.3 %
:HMM:SCOP  3->152 1oysA1 d.14.1.4 * 3.3e-41 40.0 %
:HMM:SCOP  155->239 1oysA2 d.101.1.1 * 1.2e-21 41.2 %
:RPS:PFM   12->142 PF01138 * RNase_PH 8e-16 38.6 %
:RPS:PFM   162->223 PF03725 * RNase_PH_C 4e-04 39.0 %
:HMM:PFM   12->142 PF01138 * RNase_PH 9.9e-30 36.5 126/132  
:HMM:PFM   161->226 PF03725 * RNase_PH_C 8.2e-13 22.7 66/68  
:BLT:SWISS 1->257 RNPH_NOCFA e-146 100.0 %
:PROS 118->131|PS01277|RIBONUCLEASE_PH

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55940.1 GT:GENE rph GT:PRODUCT putative RNase PH GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1210984..1211757 GB:FROM 1210984 GB:TO 1211757 GB:DIRECTION + GB:GENE rph GB:PRODUCT putative RNase PH GB:PROTEIN_ID BAD55940.1 LENGTH 257 SQ:AASEQ MSRRADGRADDELREVRITRGFTTHPAGSVLVEFGQTRVMCTASVTEGVPAWRRDSGLGWLTAEYAMLPAATHTRSGRESVKGRVGGRTQEISRLVGRSLRACIDLAAIGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTWLGAAGALADPQPISCAIAAVSVGVVDGRVRLDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDAALAGCEQLFAVQKEALALPYPGVLPEPAEPAKRK GT:EXON 1|1-257:0| SW:ID RNPH_NOCFA SW:DE RecName: Full=Ribonuclease PH; Short=RNase PH; EC=2.7.7.56;AltName: Full=tRNA nucleotidyltransferase; SW:GN Name=rph; OrderedLocusNames=NFA_10950; SW:KW Complete proteome; Nucleotidyltransferase; Transferase;tRNA processing. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->257|RNPH_NOCFA|e-146|100.0|257/257| GO:SWS:NREP 3 GO:SWS GO:0016779|"GO:nucleotidyltransferase activity"|Nucleotidyltransferase| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| GO:SWS GO:0008033|"GO:tRNA processing"|tRNA processing| PROS 118->131|PS01277|RIBONUCLEASE_PH|PDOC00983| BL:PDB:NREP 1 BL:PDB:REP 2->248|3b4tA|e-116|84.4|243/243| RP:PDB:NREP 1 RP:PDB:REP 3->248|3b4tC|3e-65|84.2|241/241| RP:PFM:NREP 2 RP:PFM:REP 12->142|PF01138|8e-16|38.6|127/130|RNase_PH| RP:PFM:REP 162->223|PF03725|4e-04|39.0|59/68|RNase_PH_C| HM:PFM:NREP 2 HM:PFM:REP 12->142|PF01138|9.9e-30|36.5|126/132|RNase_PH| HM:PFM:REP 161->226|PF03725|8.2e-13|22.7|66/68|RNase_PH_C| GO:PFM:NREP 6 GO:PFM GO:0000175|"GO:3'-5'-exoribonuclease activity"|PF01138|IPR001247| GO:PFM GO:0003723|"GO:RNA binding"|PF01138|IPR001247| GO:PFM GO:0006396|"GO:RNA processing"|PF01138|IPR001247| GO:PFM GO:0000175|"GO:3'-5'-exoribonuclease activity"|PF03725|IPR015847| GO:PFM GO:0003723|"GO:RNA binding"|PF03725|IPR015847| GO:PFM GO:0006396|"GO:RNA processing"|PF03725|IPR015847| RP:SCP:NREP 2 RP:SCP:REP 4->142|2ba0D1|1e-35|32.8|134/144|d.14.1.4| RP:SCP:REP 157->244|1oypA2|9e-21|52.3|88/92|d.101.1.1| HM:SCP:REP 3->152|1oysA1|3.3e-41|40.0|150/151|d.14.1.4|1/1|Ribosomal protein S5 domain 2-like| HM:SCP:REP 155->239|1oysA2|1.2e-21|41.2|85/86|d.101.1.1|1/1|Ribonuclease PH domain 2-like| OP:NHOMO 669 OP:NHOMOORG 650 OP:PATTERN ------12-------111-----1--------111-------------11-1111111111111-1-1 1111111111111111111-1111111111111111111111111111-1111111111111111111111-1111111--1-11111--------------------------------1111------------11111111-11111---111111111-1-1-1111-1-----1----111--11--11111111111111111111111111111111111111111--------------------1---------------------------------------------------------------------111---------1-11111-111--1--1--1111111111111111-111111111-----111111111111111111111111-1111111111111111111111111111111111111111111111111111111----------111111111111111-----11111111111111111111111111111111111111-111111111--111-11111111111111111111111---1----------1111211111111111--------------------------11111111111111111111111111111111--111111-----11111111111-11111-11-1111111111111111111111111111111111111111111111111-122222222222--111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111--1------------------------------------------------------11 -----11-------1----------------------------------------------------------1---------------------------------1-12---------------------------------------------------1-111--21112---1-------1--2-2---1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 248 STR:RPRED 96.5 SQ:SECSTR #cccTTcccTTccccEEEEETccccccEEEEEEETTEEEEEEEEEEEccccccccccccEEEEEEEEcGGGcccccccHHHHTcccHHHHHHHHHHHHHHHTTccTTTTccEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHTcccccccccccEEEEEEEEETTEEEEcccHHHHHHEEEEEEEEEETTccEEEEEcccTTccccHHHHHHHHHHHHHHHHHHHHHHHHHHTccccccccE######## DISOP:02AL 50-55, 74-88, 240-257| PSIPRED ccccccccccccEEEEEEEEccccccccEEEEEEccEEEEEEEEEccccccccccccccEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHcccEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEccEEEEcccHHHHHHcccEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccccccccc //