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Nocardia farcinica IFM 10152 (nfar0)
Gene : rplB
DDBJ      :rplB         putative ribosomal protein L2
Swiss-Prot:RL2_NOCFA    RecName: Full=50S ribosomal protein L2;

Homologs  Archaea  68/68 : Bacteria  909/915 : Eukaryota  192/199 : Viruses  0/175   --->[See Alignment]
b.34.5b.40.4
:278 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->272 2i2tC PDBj 9e-79 54.6 %
:RPS:PDB   32->249 3dllA PDBj 7e-79 58.3 %
:RPS:SCOP  5->126 2hgjD2  b.40.4.5 * 3e-25 57.4 %
:RPS:SCOP  128->266 1s72A1  b.34.5.3 * 2e-29 41.0 %
:HMM:SCOP  38->127 1ffkA2 b.40.4.5 * 2.1e-31 62.2 %
:HMM:SCOP  128->267 1ffkA1 b.34.5.3 * 1.6e-55 62.9 %
:RPS:PFM   62->117 PF00181 * Ribosomal_L2 4e-12 65.5 %
:RPS:PFM   125->253 PF03947 * Ribosomal_L2_C 8e-41 66.7 %
:HMM:PFM   125->253 PF03947 * Ribosomal_L2_C 1e-59 65.1 129/130  
:HMM:PFM   42->118 PF00181 * Ribosomal_L2 1.7e-35 67.1 76/77  
:BLT:SWISS 1->278 RL2_NOCFA e-154 100.0 %
:PROS 219->230|PS00467|RIBOSOMAL_L2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55581.1 GT:GENE rplB GT:PRODUCT putative ribosomal protein L2 GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 796435..797271 GB:FROM 796435 GB:TO 797271 GB:DIRECTION + GB:GENE rplB GB:PRODUCT putative ribosomal protein L2 GB:PROTEIN_ID BAD55581.1 LENGTH 278 SQ:AASEQ MAIRKYKPTTPGRRGSSVSDFAEITRSTPEKSLLRPLTKSGGRNAHGRITTRHRGGGHKRAYRVIDFRRLDKDGIPAKVAHIEYDPNRTANIALLHYVDGEKRYILAPKGVTQGTPIESGPTADIKPGNNLPLRNIPTGTTIHNVELRPGGGAKLARAAGMSIQLLGKEGPYATLRMPSGEIRRVDVRCRATVGEVGNAEQSNINWGKAGRMRWKGRRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGQPEGRTRKPNRPSDKLIVRRRKTGKKR GT:EXON 1|1-278:0| SW:ID RL2_NOCFA SW:DE RecName: Full=50S ribosomal protein L2; SW:GN Name=rplB; OrderedLocusNames=NFA_7360; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->278|RL2_NOCFA|e-154|100.0|278/278| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| PROS 219->230|PS00467|RIBOSOMAL_L2|PDOC00384| SEG 46->60|hgrittrhrggghkr| BL:PDB:NREP 1 BL:PDB:REP 2->272|2i2tC|9e-79|54.6|269/271| RP:PDB:NREP 1 RP:PDB:REP 32->249|3dllA|7e-79|58.3|218/218| RP:PFM:NREP 2 RP:PFM:REP 62->117|PF00181|4e-12|65.5|55/77|Ribosomal_L2| RP:PFM:REP 125->253|PF03947|8e-41|66.7|129/129|Ribosomal_L2_C| HM:PFM:NREP 2 HM:PFM:REP 125->253|PF03947|1e-59|65.1|129/130|Ribosomal_L2_C| HM:PFM:REP 42->118|PF00181|1.7e-35|67.1|76/77|Ribosomal_L2| GO:PFM:NREP 8 GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00181|IPR002171| GO:PFM GO:0005622|"GO:intracellular"|PF00181|IPR002171| GO:PFM GO:0005840|"GO:ribosome"|PF00181|IPR002171| GO:PFM GO:0006412|"GO:translation"|PF00181|IPR002171| GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF03947|IPR002171| GO:PFM GO:0005622|"GO:intracellular"|PF03947|IPR002171| GO:PFM GO:0005840|"GO:ribosome"|PF03947|IPR002171| GO:PFM GO:0006412|"GO:translation"|PF03947|IPR002171| RP:SCP:NREP 2 RP:SCP:REP 5->126|2hgjD2|3e-25|57.4|122/122|b.40.4.5| RP:SCP:REP 128->266|1s72A1|2e-29|41.0|139/147|b.34.5.3| HM:SCP:REP 38->127|1ffkA2|2.1e-31|62.2|90/90|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 128->267|1ffkA1|1.6e-55|62.9|140/0|b.34.5.3|1/1|Translation proteins SH3-like domain| OP:NHOMO 1431 OP:NHOMOORG 1169 OP:PATTERN 11111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 2211111183212222212122222122222222222312222222222222222221222221322212211331311122221134-23222222222221545113142322232-2112134232493-23411-22-223-121-22122233132122231322312233222Q22222646G2531111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 275 STR:RPRED 98.9 SQ:SECSTR #ccccccccccccccccccccTccccccccccccccEEccccccccccccccccccccccEEccccccccTTTTcccccccccccTTTccccEEEccTTTccEEEcccccccTTcccccccccccccccccccTTccTTccEEcccccccccccccccTTcccccccEETTEEcEEETTTEEEcccTTcccEEccccTTcccccccccTTTTTTTcccccccTTcccTTTcTTccccccccccccccccccccccccccccccccccccccccccc## DISOP:02AL 36-49, 234-261, 270-271, 275-278| PSIPRED ccccccccccccccEEEEEEcHHHcccccccEEEEEEEccccccccEEEEEEEccccHHHEEEEEEccccccccEEEEEEEEEEcccccccEEEEEEEccEEEEEEcccccccccEEEEccccccccccEEEHHHcccccEEEEEEEcccccEEEEEEcccEEEEEEEEccEEEEEEccccEEEEccccEEEEEEEEcccccEEEHHHHHHHHHcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccEEEEEccccccc //