Nocardia farcinica IFM 10152 (nfar0)
Gene : rplB
DDBJ :rplB putative ribosomal protein L2
Swiss-Prot:RL2_NOCFA RecName: Full=50S ribosomal protein L2;
Homologs Archaea 68/68 : Bacteria 909/915 : Eukaryota 192/199 : Viruses 0/175 --->[See Alignment]
b.34.5
b.40.4
:278 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB 2->272 2i2tC PDBj 9e-79 54.6 %
:RPS:PDB 32->249 3dllA PDBj 7e-79 58.3 %
:RPS:SCOP 5->126 2hgjD2 b.40.4.5 * 3e-25 57.4 %
:RPS:SCOP 128->266 1s72A1 b.34.5.3 * 2e-29 41.0 %
:HMM:SCOP 38->127 1ffkA2 b.40.4.5 * 2.1e-31 62.2 %
:HMM:SCOP 128->267 1ffkA1 b.34.5.3 * 1.6e-55 62.9 %
:RPS:PFM 62->117 PF00181 * Ribosomal_L2 4e-12 65.5 %
:RPS:PFM 125->253 PF03947 * Ribosomal_L2_C 8e-41 66.7 %
:HMM:PFM 125->253 PF03947 * Ribosomal_L2_C 1e-59 65.1 129/130
:HMM:PFM 42->118 PF00181 * Ribosomal_L2 1.7e-35 67.1 76/77
:BLT:SWISS 1->278 RL2_NOCFA e-154 100.0 %
:PROS 219->230|PS00467|RIBOSOMAL_L2
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55581.1
GT:GENE rplB
GT:PRODUCT putative ribosomal protein L2
GT:DATABASE GIB00210CH01
GT:ORG nfar0
GB:ACCESSION GIB00210CH01
GB:LOCATION 796435..797271
GB:FROM 796435
GB:TO 797271
GB:DIRECTION +
GB:GENE rplB
GB:PRODUCT putative ribosomal protein L2
GB:PROTEIN_ID BAD55581.1
LENGTH 278
SQ:AASEQ MAIRKYKPTTPGRRGSSVSDFAEITRSTPEKSLLRPLTKSGGRNAHGRITTRHRGGGHKRAYRVIDFRRLDKDGIPAKVAHIEYDPNRTANIALLHYVDGEKRYILAPKGVTQGTPIESGPTADIKPGNNLPLRNIPTGTTIHNVELRPGGGAKLARAAGMSIQLLGKEGPYATLRMPSGEIRRVDVRCRATVGEVGNAEQSNINWGKAGRMRWKGRRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGQPEGRTRKPNRPSDKLIVRRRKTGKKR
GT:EXON 1|1-278:0|
SW:ID RL2_NOCFA
SW:DE RecName: Full=50S ribosomal protein L2;
SW:GN Name=rplB; OrderedLocusNames=NFA_7360;
SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding.
SW:EXACT T
SW:FUNC +
BL:SWS:NREP 1
BL:SWS:REP 1->278|RL2_NOCFA|e-154|100.0|278/278|
GO:SWS:NREP 4
GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein|
GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein|
GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding|
GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding|
PROS 219->230|PS00467|RIBOSOMAL_L2|PDOC00384|
SEG 46->60|hgrittrhrggghkr|
BL:PDB:NREP 1
BL:PDB:REP 2->272|2i2tC|9e-79|54.6|269/271|
RP:PDB:NREP 1
RP:PDB:REP 32->249|3dllA|7e-79|58.3|218/218|
RP:PFM:NREP 2
RP:PFM:REP 62->117|PF00181|4e-12|65.5|55/77|Ribosomal_L2|
RP:PFM:REP 125->253|PF03947|8e-41|66.7|129/129|Ribosomal_L2_C|
HM:PFM:NREP 2
HM:PFM:REP 125->253|PF03947|1e-59|65.1|129/130|Ribosomal_L2_C|
HM:PFM:REP 42->118|PF00181|1.7e-35|67.1|76/77|Ribosomal_L2|
GO:PFM:NREP 8
GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00181|IPR002171|
GO:PFM GO:0005622|"GO:intracellular"|PF00181|IPR002171|
GO:PFM GO:0005840|"GO:ribosome"|PF00181|IPR002171|
GO:PFM GO:0006412|"GO:translation"|PF00181|IPR002171|
GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF03947|IPR002171|
GO:PFM GO:0005622|"GO:intracellular"|PF03947|IPR002171|
GO:PFM GO:0005840|"GO:ribosome"|PF03947|IPR002171|
GO:PFM GO:0006412|"GO:translation"|PF03947|IPR002171|
RP:SCP:NREP 2
RP:SCP:REP 5->126|2hgjD2|3e-25|57.4|122/122|b.40.4.5|
RP:SCP:REP 128->266|1s72A1|2e-29|41.0|139/147|b.34.5.3|
HM:SCP:REP 38->127|1ffkA2|2.1e-31|62.2|90/90|b.40.4.5|1/1|Nucleic acid-binding proteins|
HM:SCP:REP 128->267|1ffkA1|1.6e-55|62.9|140/0|b.34.5.3|1/1|Translation proteins SH3-like domain|
OP:NHOMO 1431
OP:NHOMOORG 1169
OP:PATTERN 11111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 2211111183212222212122222122222222222312222222222222222221222221322212211331311122221134-23222222222221545113142322232-2112134232493-23411-22-223-121-22122233132122231322312233222Q22222646G2531111111 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 275
STR:RPRED 98.9
SQ:SECSTR #ccccccccccccccccccccTccccccccccccccEEccccccccccccccccccccccEEccccccccTTTTcccccccccccTTTccccEEEccTTTccEEEcccccccTTcccccccccccccccccccTTccTTccEEcccccccccccccccTTcccccccEETTEEcEEETTTEEEcccTTcccEEccccTTcccccccccTTTTTTTcccccccTTcccTTTcTTccccccccccccccccccccccccccccccccccccccccccc##
DISOP:02AL 36-49, 234-261, 270-271, 275-278|
PSIPRED ccccccccccccccEEEEEEcHHHcccccccEEEEEEEccccccccEEEEEEEccccHHHEEEEEEccccccccEEEEEEEEEEcccccccEEEEEEEccEEEEEEcccccccccEEEEccccccccccEEEHHHcccccEEEEEEEcccccEEEEEEcccEEEEEEEEccEEEEEEccccEEEEccccEEEEEEEEcccccEEEHHHHHHHHHcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccEEEEEccccccc
//
[GTOP]
