Nocardia farcinica IFM 10152 (nfar0)
Gene : rplD
DDBJ :rplD putative ribosomal protein L4
Swiss-Prot:RL4_NOCFA RecName: Full=50S ribosomal protein L4;
Homologs Archaea 0/68 : Bacteria 904/915 : Eukaryota 146/199 : Viruses 0/175 --->[See Alignment]
c.22.1
:230 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB 43->214 1vs6E PDBj 4e-31 41.2 %
:RPS:PDB 18->217 3bboG PDBj 2e-55 33.2 %
:RPS:SCOP 25->217 1vs6E1 c.22.1.1 * 8e-43 37.2 %
:HMM:SCOP 16->220 1dmgA_ c.22.1.1 * 8.9e-67 44.1 %
:RPS:PFM 31->214 PF00573 * Ribosomal_L4 8e-37 48.6 %
:HMM:PFM 31->217 PF00573 * Ribosomal_L4 1e-64 46.8 186/192
:BLT:SWISS 1->230 RL4_NOCFA e-129 100.0 %
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55579.1
GT:GENE rplD
GT:PRODUCT putative ribosomal protein L4
GT:DATABASE GIB00210CH01
GT:ORG nfar0
GB:ACCESSION GIB00210CH01
GB:LOCATION 795407..796099
GB:FROM 795407
GB:TO 796099
GB:DIRECTION +
GB:GENE rplD
GB:PRODUCT putative ribosomal protein L4
GB:PROTEIN_ID BAD55579.1
LENGTH 230
SQ:AASEQ MSAVSTQKDTEKKANLVLPVKEAGGKSNGTVELPAEIFDVTANIALMHQVVTAQLAAARQGTHATKTRGEVSGGGKKPYRQKGTGRARQGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMIRAALHGALSDRARNDRIHVVSELVAGQTPSTKTAKNFLAELSDRKKFLVVVGREDVTAWKSVANLQNVQPIAPDQLNTYDVLNSDDVVFSVEALNAFVHGPTEAAQEESK
GT:EXON 1|1-230:0|
SW:ID RL4_NOCFA
SW:DE RecName: Full=50S ribosomal protein L4;
SW:GN Name=rplD; OrderedLocusNames=NFA_7340;
SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding.
SW:EXACT T
SW:FUNC +
BL:SWS:NREP 1
BL:SWS:REP 1->230|RL4_NOCFA|e-129|100.0|230/230|
GO:SWS:NREP 4
GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein|
GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein|
GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding|
GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding|
BL:PDB:NREP 1
BL:PDB:REP 43->214|1vs6E|4e-31|41.2|170/201|
RP:PDB:NREP 1
RP:PDB:REP 18->217|3bboG|2e-55|33.2|199/211|
RP:PFM:NREP 1
RP:PFM:REP 31->214|PF00573|8e-37|48.6|183/190|Ribosomal_L4|
HM:PFM:NREP 1
HM:PFM:REP 31->217|PF00573|1e-64|46.8|186/192|Ribosomal_L4|
GO:PFM:NREP 4
GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00573|IPR002136|
GO:PFM GO:0005622|"GO:intracellular"|PF00573|IPR002136|
GO:PFM GO:0005840|"GO:ribosome"|PF00573|IPR002136|
GO:PFM GO:0006412|"GO:translation"|PF00573|IPR002136|
RP:SCP:NREP 1
RP:SCP:REP 25->217|1vs6E1|8e-43|37.2|191/201|c.22.1.1|
HM:SCP:REP 16->220|1dmgA_|8.9e-67|44.1|204/225|c.22.1.1|1/1|Ribosomal protein L4|
OP:NHOMO 1119
OP:NHOMOORG 1050
OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111-11111111111111111111--111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111-11 ----111-----1-111111111111111-1111111111-1111111111111-1111111-11-------1-------------11-12111111111-11112-11123111111-1-11121111353-111-1-111111--1--1--1---1111112--1111911212222I2222143531321121112 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 202
STR:RPRED 87.8
SQ:SECSTR #################EEccccccccccEEEEccccccccccTTTTTTHHHHHHHHHccccccccccTTcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHTTcccccccGGGTTccccHHHHTTHHHcccccccccEEccccccccTTTccccccEEcccccccHHHHHHcccEEccTTHHHHHHH###########
DISOP:02AL 1-12, 58-91, 221-230|
PSIPRED ccEEEcccccccccEEEEEEEEcccccccEEEccHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHccccccEEEEEccccccHHHHHHcccccEEEEcccccHHHHHccccEEEEHHHHHHHHcccccccccccc
//
[GTOP]
