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Nocardia farcinica IFM 10152 (nfar0)
Gene : rplV
DDBJ      :rplV         putative ribosomal protein L22
Swiss-Prot:RL22_NOCFA   RecName: Full=50S ribosomal protein L22;

Homologs  Archaea  0/68 : Bacteria  768/915 : Eukaryota  10/199 : Viruses  0/175   --->[See Alignment]
d.55.1
:133 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   11->113 1vsaQ PDBj 2e-17 41.7 %
:RPS:PDB   11->116 3d5bW PDBj 1e-24 40.6 %
:RPS:SCOP  11->116 1bxeA  d.55.1.1 * 8e-32 40.6 %
:HMM:SCOP  9->117 1bxeA_ d.55.1.1 * 2.7e-36 54.1 %
:RPS:PFM   15->113 PF00237 * Ribosomal_L22 2e-14 44.4 %
:HMM:PFM   13->116 PF00237 * Ribosomal_L22 6.9e-42 57.7 104/105  
:BLT:SWISS 1->119 RL22_NOCFA 2e-49 100.0 %
:PROS 91->115|PS00464|RIBOSOMAL_L22
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55583.1 GT:GENE rplV GT:PRODUCT putative ribosomal protein L22 GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 797565..797966 GB:FROM 797565 GB:TO 797966 GB:DIRECTION + GB:GENE rplV GB:PRODUCT putative ribosomal protein L22 GB:PROTEIN_ID BAD55583.1 LENGTH 133 SQ:AASEQ MTTTETQNPTARATAKHVRVTPMKARRVVDLVRGKRVEDALAILKFAPQAASEPVAKVVASAAANAENNLGLDPATLVISTAYVDEGATLKRFQPRAQGRAFRIRKRTSHITIEVESVPTAGGTRGRRKGGAK GT:EXON 1|1-133:0| SW:ID RL22_NOCFA SW:DE RecName: Full=50S ribosomal protein L22; SW:GN Name=rplV; OrderedLocusNames=NFA_7380; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->119|RL22_NOCFA|2e-49|100.0|119/133| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| PROS 91->115|PS00464|RIBOSOMAL_L22|PDOC00387| SEG 50->69|aasepvakvvasaaanaenn| SEG 120->132|taggtrgrrkgga| BL:PDB:NREP 1 BL:PDB:REP 11->113|1vsaQ|2e-17|41.7|103/109| RP:PDB:NREP 1 RP:PDB:REP 11->116|3d5bW|1e-24|40.6|106/112| RP:PFM:NREP 1 RP:PFM:REP 15->113|PF00237|2e-14|44.4|99/105|Ribosomal_L22| HM:PFM:NREP 1 HM:PFM:REP 13->116|PF00237|6.9e-42|57.7|104/105|Ribosomal_L22| GO:PFM:NREP 4 GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00237|IPR001063| GO:PFM GO:0005622|"GO:intracellular"|PF00237|IPR001063| GO:PFM GO:0005840|"GO:ribosome"|PF00237|IPR001063| GO:PFM GO:0006412|"GO:translation"|PF00237|IPR001063| RP:SCP:NREP 1 RP:SCP:REP 11->116|1bxeA|8e-32|40.6|106/110|d.55.1.1| HM:SCP:REP 9->117|1bxeA_|2.7e-36|54.1|109/110|d.55.1.1|1/1|Ribosomal protein L22| OP:NHOMO 789 OP:NHOMOORG 778 OP:PATTERN -------------------------------------------------------------------- 111-111111111111111-11111111111111111111111111111111111111111111111111111--11111111-11111111-------111111111----------------1-----------111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111--11-2111111---11111---11111111111---------111111111111111111---1-111111-----------------1----------111111111111111----------11111111111111111111111111111111111111111111111111111-1-1111111111-1-11111-11111111111111111111----111111111111111111111111-11-1111111111111111111111111111111111-1-11111111111111111111111111-111111111111111111111111111111111111111111-1111111111111111111111-111-----1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-----------------111111-11111--111111-11---11111111111-1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111A11-11---1--1------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 108 STR:RPRED 81.2 SQ:SECSTR ##########cEEEEEEEEccHHHHHHHHHHTTTccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccGGGEEEEEEEEEEEEEEEcccEETTTEEcccEEEEEEEEEEEEcc############### DISOP:02AL 1-10, 116-133| PSIPRED cccccccccEEEEEEccccccHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHEEEEEEEEccccEEccccccccccccccccccccEEEEEEEcccHHHHHHHHHcccc //