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Nocardia farcinica IFM 10152 (nfar0)
Gene : rpoA
DDBJ      :rpoA         putative RNA polymerase alpha subunit
Swiss-Prot:RPOA_NOCFA   RecName: Full=DNA-directed RNA polymerase subunit alpha;         Short=RNAP subunit alpha;         EC=2.7.7.6;AltName: Full=Transcriptase subunit alpha;AltName: Full=RNA polymerase subunit alpha;

Homologs  Archaea  0/68 : Bacteria  911/915 : Eukaryota  12/199 : Viruses  0/175   --->[See Alignment]
a.289.1a.60.3d.181.1d.74.3
:352 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->217 1ynjB PDBj 8e-54 52.4 %
:BLT:PDB   235->309 3gfkB PDBj 7e-18 53.3 %
:RPS:PDB   16->225 1bdfD PDBj 4e-68 46.4 %
:RPS:PDB   249->310 1doqA PDBj 1e-22 38.7 %
:RPS:SCOP  10->65 1bdfA1  d.74.3.1 * 3e-05 40.0 %
:RPS:SCOP  48->169 1bdfA2  d.181.1.1 * 1e-44 45.0 %
:RPS:SCOP  142->302 2q0zX1  a.289.1.1 * 7e-24 11.8 %
:HMM:SCOP  48->169 1i6vA2 d.181.1.1 * 3e-47 57.0 %
:HMM:SCOP  243->323 1cooA_ a.60.3.1 * 1e-23 43.2 %
:RPS:PFM   23->217 PF01193 * RNA_pol_L 9e-37 49.2 %
:RPS:PFM   249->298 PF03118 * RNA_pol_A_CTD 2e-17 62.0 %
:HMM:PFM   244->302 PF03118 * RNA_pol_A_CTD 1.6e-29 52.5 59/67  
:HMM:PFM   58->149 PF01000 * RNA_pol_A_bac 2.3e-27 42.9 91/111  
:BLT:SWISS 1->352 RPOA_NOCFA 0.0 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55682.1 GT:GENE rpoA GT:PRODUCT putative RNA polymerase alpha subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 930211..931269 GB:FROM 930211 GB:TO 931269 GB:DIRECTION + GB:GENE rpoA GB:PRODUCT putative RNA polymerase alpha subunit GB:PROTEIN_ID BAD55682.1 LENGTH 352 SQ:AASEQ MLISQRPTLTEEVIAENRSKFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYVRKQGPGTVTAGDIVPPAGVVVHNPDMHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDRLILDVETKNSISARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAEADHIASFGLPIEDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKVKLHALGLSLKDSPASFDPSSVVGYDASTGTWSDSGTFSDNDGGEQDYAETEQL GT:EXON 1|1-352:0| SW:ID RPOA_NOCFA SW:DE RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6;AltName: Full=Transcriptase subunit alpha;AltName: Full=RNA polymerase subunit alpha; SW:GN Name=rpoA; OrderedLocusNames=NFA_8370; SW:KW Complete proteome; DNA-directed RNA polymerase;Nucleotidyltransferase; Transcription; Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->352|RPOA_NOCFA|0.0|100.0|352/352| GO:SWS:NREP 4 GO:SWS GO:0003899|"GO:DNA-directed RNA polymerase activity"|DNA-directed RNA polymerase| GO:SWS GO:0016779|"GO:nucleotidyltransferase activity"|Nucleotidyltransferase| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| BL:PDB:NREP 2 BL:PDB:REP 7->217|1ynjB|8e-54|52.4|210/225| BL:PDB:REP 235->309|3gfkB|7e-18|53.3|75/76| RP:PDB:NREP 2 RP:PDB:REP 16->225|1bdfD|4e-68|46.4|209/231| RP:PDB:REP 249->310|1doqA|1e-22|38.7|62/69| RP:PFM:NREP 2 RP:PFM:REP 23->217|PF01193|9e-37|49.2|193/207|RNA_pol_L| RP:PFM:REP 249->298|PF03118|2e-17|62.0|50/67|RNA_pol_A_CTD| HM:PFM:NREP 2 HM:PFM:REP 244->302|PF03118|1.6e-29|52.5|59/67|RNA_pol_A_CTD| HM:PFM:REP 58->149|PF01000|2.3e-27|42.9|91/111|RNA_pol_A_bac| GO:PFM:NREP 6 GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF01193|IPR011261| GO:PFM GO:0006350|"GO:transcription"|PF01193|IPR011261| GO:PFM GO:0046983|"GO:protein dimerization activity"|PF01193|IPR011261| GO:PFM GO:0003677|"GO:DNA binding"|PF03118|IPR011260| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF03118|IPR011260| GO:PFM GO:0006350|"GO:transcription"|PF03118|IPR011260| RP:SCP:NREP 3 RP:SCP:REP 10->65|1bdfA1|3e-05|40.0|56/105|d.74.3.1| RP:SCP:REP 48->169|1bdfA2|1e-44|45.0|120/121|d.181.1.1| RP:SCP:REP 142->302|2q0zX1|7e-24|11.8|161/176|a.289.1.1| HM:SCP:REP 48->169|1i6vA2|3e-47|57.0|121/0|d.181.1.1|1/1|Insert subdomain of RNA polymerase alpha subunit| HM:SCP:REP 243->323|1cooA_|1e-23|43.2|81/0|a.60.3.1|1/1|C-terminal domain of RNA polymerase alpha subunit| OP:NHOMO 943 OP:NHOMOORG 923 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111111111111111111111111111111211111111111111111111111111111111111111111111111111111111111111111111222111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112222222221111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 21------2-----1-----------------------------------------------------------------------------------------------------------------------------------------------1----------------1-1------1211---1------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 317 STR:RPRED 90.1 SQ:SECSTR ###ccccccccccccccEEEEEEEEEcTTHHHHHHHHHHHHHTTccccEEEEEEEETTccccccccTTccccHHHHHHHHHTccEEEccccEEEEEEEEEccEEEEGGGccccccEEEccTTcEEEEEccTTEEEEEEEEEEcccEEccccccccccccccEEccEEcccEEEEEEEccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHGGGGccccccccccccGGGccTTHHHHHcEccHHHHTccHHHHHHHHHTTcccHHHHHHccHHHHTTcTTccHHHHHHHHHHHHHHccccccccccccccTT################################ DISOP:02AL 1-4, 228-245, 346-349, 351-352| PSIPRED ccEEEccEEEEEEccccEEEEEEEEccccccHHHHHHHHHHHHHcccccEEEEEEEccEEEcccccccccccHHHHHHHcccEEEEEccccEEEEEEEEEccEEEEEEHEEcccccEEEcccEEEEEEccccEEEEEEEEEccccEEEccccccccccccEEEEcccccccEEEEEEEEEEcccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHcccHHHHcccHHHHHHHHHcccHHHHHHHHccHHHHHHccccccccHHHHHHHHHHccccccccccccccccHHHcccccccccccccccccccccccHHHHHcc //