[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : rpsA
DDBJ      :rpsA         putative ribosomal protein S1
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  881/915 : Eukaryota  35/199 : Viruses  0/175   --->[See Alignment]
a.152.1a.69.1b.40.4
:487 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   28->104 2oceA PDBj 6e-06 31.2 %
:BLT:PDB   89->187 2oceA PDBj 1e-04 30.2 %
:BLT:PDB   292->364 1sroA PDBj 6e-14 45.8 %
:RPS:PDB   8->366 3bzkA PDBj 4e-26 15.8 %
:RPS:SCOP  35->106 1sroA  b.40.4.5 * 1e-11 26.4 %
:RPS:SCOP  79->191 1gu9A  a.152.1.1 * 3e-12 15.2 %
:RPS:SCOP  167->248 1bmfD1  a.69.1.1 * 2e-06 10.5 %
:RPS:SCOP  275->366 2oceA4  b.40.4.5 * 4e-18 34.8 %
:HMM:SCOP  14->130 1wi5A_ b.40.4.5 * 1.3e-26 39.3 %
:HMM:SCOP  108->188 1q46A2 b.40.4.5 * 3e-18 33.3 %
:HMM:SCOP  202->301 1wi5A_ b.40.4.5 * 3.5e-30 47.0 %
:HMM:SCOP  279->363 1q46A2 b.40.4.5 * 6.2e-26 45.9 %
:RPS:PFM   35->90 PF00575 * S1 8e-05 37.5 %
:RPS:PFM   292->360 PF00575 * S1 2e-14 50.7 %
:HMM:PFM   32->104 PF00575 * S1 1.3e-19 41.1 73/74  
:HMM:PFM   119->187 PF00575 * S1 2.9e-18 40.6 69/74  
:HMM:PFM   205->276 PF00575 * S1 2e-27 51.4 72/74  
:HMM:PFM   290->362 PF00575 * S1 3.4e-26 45.2 73/74  
:BLT:SWISS 1->487 RS1_MYCTU 0.0 89.6 %
:PROS 445->468|PS00583|PFKB_KINASES_1
:COIL
:REPEAT 4|35->106|122->193|208->278|293->364
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56743.1 GT:GENE rpsA GT:PRODUCT putative ribosomal protein S1 GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2071189..2072652 GB:FROM 2071189 GB:TO 2072652 GB:DIRECTION + GB:GENE rpsA GB:PRODUCT putative ribosomal protein S1 GB:PROTEIN_ID BAD56743.1 LENGTH 487 SQ:AASEQ MPTTVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYSPEFDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGYEKQRDEWESRYAEAERRHKMHTAQMEKMAADAAAEAANGGGGNYSSESGAQSSAGQSEPAGGSLASDAQLAALREKLSGNA GT:EXON 1|1-487:0| BL:SWS:NREP 1 BL:SWS:REP 1->487|RS1_MYCTU|0.0|89.6|480/481| PROS 445->468|PS00583|PFKB_KINASES_1|PDOC00504| COIL:NAA 7 COIL:NSEG 1 COIL:REGION 101->107| NREPEAT 1 REPEAT 4|35->106|122->193|208->278|293->364| SEG 225->234|vdlggvdglv| SEG 249->271|evvevgnevtvevldvdldrerv| SEG 435->469|aadaaaeaanggggnyssesgaqssagqsepaggs| BL:PDB:NREP 3 BL:PDB:REP 28->104|2oceA|6e-06|31.2|77/729| BL:PDB:REP 89->187|2oceA|1e-04|30.2|96/729| BL:PDB:REP 292->364|1sroA|6e-14|45.8|72/76| RP:PDB:NREP 1 RP:PDB:REP 8->366|3bzkA|4e-26|15.8|342/728| RP:PFM:NREP 2 RP:PFM:REP 35->90|PF00575|8e-05|37.5|56/74|S1| RP:PFM:REP 292->360|PF00575|2e-14|50.7|69/74|S1| HM:PFM:NREP 4 HM:PFM:REP 32->104|PF00575|1.3e-19|41.1|73/74|S1| HM:PFM:REP 119->187|PF00575|2.9e-18|40.6|69/74|S1| HM:PFM:REP 205->276|PF00575|2e-27|51.4|72/74|S1| HM:PFM:REP 290->362|PF00575|3.4e-26|45.2|73/74|S1| GO:PFM:NREP 2 GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 4 RP:SCP:REP 35->106|1sroA|1e-11|26.4|71/76|b.40.4.5| RP:SCP:REP 79->191|1gu9A|3e-12|15.2|112/172|a.152.1.1| RP:SCP:REP 167->248|1bmfD1|2e-06|10.5|82/118|a.69.1.1| RP:SCP:REP 275->366|2oceA4|4e-18|34.8|92/94|b.40.4.5| HM:SCP:REP 14->130|1wi5A_|1.3e-26|39.3|117/0|b.40.4.5|1/4|Nucleic acid-binding proteins| HM:SCP:REP 108->188|1q46A2|3e-18|33.3|81/0|b.40.4.5|2/4|Nucleic acid-binding proteins| HM:SCP:REP 202->301|1wi5A_|3.5e-30|47.0|100/0|b.40.4.5|3/4|Nucleic acid-binding proteins| HM:SCP:REP 279->363|1q46A2|6.2e-26|45.9|85/0|b.40.4.5|4/4|Nucleic acid-binding proteins| OP:NHOMO 1741 OP:NHOMOORG 918 OP:PATTERN ---------------------------------1--------1------------------------- 2221111111111111111-1111111111111111111111221111111111111111111111121211111111111111-1112222121121111111121311111111111111113111111111115554411-41223433322332222222222333322222222222211211111244333333334333333344444333444343444444412122222222222222232223111221111111112123121-1112223333333222222222223333333333333322333222222335444444444432444333333342122133222143124411112223111111111112111111211211111111111-211111111111111111111111113211122222113111111111112122111222222111111111111111-1111122222211111111111111111122111111112222111222222221111222111211111111111211111213431332432231333122333332343221111111111111111111111111112233322323311111312111121221122-1233122122233333333333333333-333333332333333333333333333333322322233333333333333313333333333332122111111111123332222212332322232222223111323333222222222312211111111123222333333333322333333333333212222112211111111211-------------------------1111111-11122 --------------------111-1-1------111--------------1---11--1--------1----------------------------------------2----------------------------------------------------------1-------2212E221114113-22113---4 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 424 STR:RPRED 87.1 SQ:SECSTR ###cccEccEEEEEccTTHHHHHHHHHHHHHHcGGGccEEEEEccTTHHHHHTcHHHHHHccTTccHHHHHHHHHHHHHcccHcHHHHHTTccGGGccccTTTTTccHHHHHHHHHHHHHHHHHHHcEETTTccHHHHTTcTccHHHHHHHHHHHHHHccccccGGGGGcTTccHHHHHHHHTTEEHccHHHHHGGGEEcTTcccGGGGccccGGGHHHHHHHHHHTTccHHHHTcHHHHHHccGGTccccccHHHHHHHHHHHHcTTccccccccHHHHHHTcccGGGccTTcEEEEEEEEEETTEEEEEccccccEEEEGGGGcccccccHHHHccTTcEEEEEEEEEETTTTEEEEEccTTccHHHHHHHHTccccccccTTccHHHHHHTcccccEEcTTGGGccHHHHHHHHHHHHHHHHHH############################################################ DISOP:02AL 13-15, 366-389, 435-473, 483-487| PSIPRED ccccccccEEEEEcHHHHHHHHHHHHHHHHccccccEEEEEEEEEEccEEEEEcccccEEEEEHHHHccccccccHHHcccccEEEEEEEEEEcccccEEEEHHHHHHHHHHHHHHHHHcccccEEEEEEEEEccccEEEEccccccccccccccccccccHHcccEEEEEEEEEcccccEEEEEHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEccEEEEEEccccEEEEEEEEccccccccHHHcccccEEEEEEEEEcccccEEEEEEHHHcccHHHHHHcccccccEEEEEEEEEEccEEEEEEccccEEEEEcccccccccccHHHEEEcccEEEEEEEEEEccccEEEEEEEEcccccHHHHHHHHcccccEEEccccccccccccccccHHHHHHHHHHHHHHHcccccHHHcccEEEEEEEEEccHHHHHHHcccccccccccccccccccccccEEEEEHHHHHHHHHHHcccc //