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Nocardia farcinica IFM 10152 (nfar0)
Gene : rpsD
DDBJ      :rpsD         putative ribosomal protein S4
Swiss-Prot:RS4_NOCFA    RecName: Full=30S ribosomal protein S4;

Homologs  Archaea  14/68 : Bacteria  912/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
d.66.1
:201 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->201 2j00D PDBj 9e-47 49.7 %
:RPS:PDB   1->201 3bbnD PDBj 8e-37 39.2 %
:RPS:SCOP  2->201 1fjgD  d.66.1.2 * 3e-38 49.0 %
:HMM:SCOP  2->201 1fjgD_ d.66.1.2 * 1.9e-65 48.0 %
:RPS:PFM   33->90 PF00163 * Ribosomal_S4 6e-11 56.9 %
:RPS:PFM   92->137 PF01479 * S4 3e-09 56.5 %
:HMM:PFM   2->90 PF00163 * Ribosomal_S4 5.5e-24 39.3 89/94  
:HMM:PFM   91->138 PF01479 * S4 9.4e-22 56.2 48/48  
:BLT:SWISS 1->201 RS4_NOCFA e-114 100.0 %
:PROS 89->113|PS00632|RIBOSOMAL_S4

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55681.1 GT:GENE rpsD GT:PRODUCT putative ribosomal protein S4 GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 929498..930103 GB:FROM 929498 GB:TO 930103 GB:DIRECTION + GB:GENE rpsD GB:PRODUCT putative ribosomal protein S4 GB:PROTEIN_ID BAD55681.1 LENGTH 201 SQ:AASEQ MARYTGPITRKSRRLRVDLVGGDQAFERRPYPPGQHGRARIKESEYLLQLQEKQKARFSYGVMEKQFRRYYEEANRQKGKTGDNLLRLLETRLDNVVYRAGLARTRRQARQLVSHGHFLVNGVKVDVPSYRVSQYDIIDVKEKSLSTLPFQVARETLGERPVPGWLQVLPGRLRILVHQEPERAQIDVPLQEQLIVEYYSK GT:EXON 1|1-201:0| SW:ID RS4_NOCFA SW:DE RecName: Full=30S ribosomal protein S4; SW:GN Name=rpsD; OrderedLocusNames=NFA_8360; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->201|RS4_NOCFA|e-114|100.0|201/201| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| PROS 89->113|PS00632|RIBOSOMAL_S4|PDOC00549| BL:PDB:NREP 1 BL:PDB:REP 3->201|2j00D|9e-47|49.7|199/208| RP:PDB:NREP 1 RP:PDB:REP 1->201|3bbnD|8e-37|39.2|199/199| RP:PFM:NREP 2 RP:PFM:REP 33->90|PF00163|6e-11|56.9|58/93|Ribosomal_S4| RP:PFM:REP 92->137|PF01479|3e-09|56.5|46/46|S4| HM:PFM:NREP 2 HM:PFM:REP 2->90|PF00163|5.5e-24|39.3|89/94|Ribosomal_S4| HM:PFM:REP 91->138|PF01479|9.4e-22|56.2|48/48|S4| GO:PFM:NREP 3 GO:PFM GO:0005622|"GO:intracellular"|PF00163|IPR001912| GO:PFM GO:0019843|"GO:rRNA binding"|PF00163|IPR001912| GO:PFM GO:0003723|"GO:RNA binding"|PF01479|IPR002942| RP:SCP:NREP 1 RP:SCP:REP 2->201|1fjgD|3e-38|49.0|200/208|d.66.1.2| HM:SCP:REP 2->201|1fjgD_|1.9e-65|48.0|200/208|d.66.1.2|1/1|Alpha-L RNA-binding motif| OP:NHOMO 969 OP:NHOMOORG 932 OP:PATTERN -------1-----------------11--------11111111111---------------------- 1111111111111111111-1111111111111111111111121111111111111111221111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111323122222221211122222211111211111111111111111111121111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111122211111111121112121111111111111111111111111112211111111111111111111111111111111111111121111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------1-1----------1-1--2------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 201 STR:RPRED 100.0 SQ:SECSTR ccccccccTTccccccccccccccccccccccccccccccccccTTHHHHTTHHHHHHHHTccHHHHHHHHHHHHHccccTTTTTTHHHHccTTTTTTTTTcccccHHHHHHHHTTcEEETTEEcccTTccccTTEEEEEcccTTccHHHHHHcccTTTccccTTEEEETTTTEEEEcccccGGGccccccHHHHTTTccc DISOP:02AL 23-45| PSIPRED cccccccHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccEEEEccEEEccccEEEccccEEEEccccccHHHHHHHHHHcccccccccEEEEccccEEEEEEcccccccccccccEEEEEEEcc //