[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : rpsE
DDBJ      :rpsE         putative ribosomal protein S5
Swiss-Prot:RS5_NOCFA    RecName: Full=30S ribosomal protein S5;

Homologs  Archaea  9/68 : Bacteria  905/915 : Eukaryota  27/199 : Viruses  0/175   --->[See Alignment]
d.14.1d.50.1
:218 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   50->195 1vs5E PDBj 3e-39 52.7 %
:RPS:PDB   50->196 3d5aE PDBj 2e-33 42.9 %
:RPS:SCOP  50->114 1fjgE2  d.50.1.2 * 8e-11 35.4 %
:RPS:SCOP  117->194 1fjgE1  d.14.1.1 * 3e-13 51.3 %
:HMM:SCOP  47->115 1fjgE2 d.50.1.2 * 1.3e-22 58.0 %
:HMM:SCOP  116->196 1fjgE1 d.14.1.1 * 7.7e-26 56.8 %
:RPS:PFM   50->113 PF00333 * Ribosomal_S5 2e-10 54.7 %
:RPS:PFM   122->194 PF03719 * Ribosomal_S5_C 3e-15 63.0 %
:HMM:PFM   122->195 PF03719 * Ribosomal_S5_C 2e-33 67.6 74/74  
:HMM:PFM   50->112 PF00333 * Ribosomal_S5 6e-31 61.9 63/67  
:BLT:SWISS 1->201 RS5_NOCFA 6e-87 100.0 %
:PROS 65->97|PS00585|RIBOSOMAL_S5
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55636.1 GT:GENE rpsE GT:PRODUCT putative ribosomal protein S5 GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 857011..857667 GB:FROM 857011 GB:TO 857667 GB:DIRECTION + GB:GENE rpsE GB:PRODUCT putative ribosomal protein S5 GB:PROTEIN_ID BAD55636.1 LENGTH 218 SQ:AASEQ MPGRQRRDGGNGPAGQNSNGPEGRDNRRGGGDRRGGGDRRDNAAEKNQLERVVAINRVSKVVKGGRRFSFTALVIVGDGNGLVGVGYGKAKEVPAAIQKGVEEARKGFFRVPMIGSTITHPVQGEAAAGVVMLRPASPGTGVIAGGAARAVLECAGIHDILAKSLGSDNAINVVHATVAALKQLQRPEEVAARRGLPLEDVAPAGMLRARAQAAGGAR GT:EXON 1|1-218:0| SW:ID RS5_NOCFA SW:DE RecName: Full=30S ribosomal protein S5; SW:GN Name=rpsE; OrderedLocusNames=NFA_7910; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->201|RS5_NOCFA|6e-87|100.0|201/218| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| PROS 65->97|PS00585|RIBOSOMAL_S5|PDOC00505| SEG 23->42|grdnrrgggdrrgggdrrdn| SEG 74->88|vivgdgnglvgvgyg| SEG 202->217|apagmlraraqaagga| BL:PDB:NREP 1 BL:PDB:REP 50->195|1vs5E|3e-39|52.7|146/150| RP:PDB:NREP 1 RP:PDB:REP 50->196|3d5aE|2e-33|42.9|147/151| RP:PFM:NREP 2 RP:PFM:REP 50->113|PF00333|2e-10|54.7|64/67|Ribosomal_S5| RP:PFM:REP 122->194|PF03719|3e-15|63.0|73/74|Ribosomal_S5_C| HM:PFM:NREP 2 HM:PFM:REP 122->195|PF03719|2e-33|67.6|74/74|Ribosomal_S5_C| HM:PFM:REP 50->112|PF00333|6e-31|61.9|63/67|Ribosomal_S5| GO:PFM:NREP 9 GO:PFM GO:0003723|"GO:RNA binding"|PF00333|IPR013810| GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00333|IPR013810| GO:PFM GO:0005622|"GO:intracellular"|PF00333|IPR013810| GO:PFM GO:0005840|"GO:ribosome"|PF00333|IPR013810| GO:PFM GO:0006412|"GO:translation"|PF00333|IPR013810| GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF03719|IPR005324| GO:PFM GO:0005622|"GO:intracellular"|PF03719|IPR005324| GO:PFM GO:0005840|"GO:ribosome"|PF03719|IPR005324| GO:PFM GO:0006412|"GO:translation"|PF03719|IPR005324| RP:SCP:NREP 2 RP:SCP:REP 50->114|1fjgE2|8e-11|35.4|65/69|d.50.1.2| RP:SCP:REP 117->194|1fjgE1|3e-13|51.3|78/81|d.14.1.1| HM:SCP:REP 47->115|1fjgE2|1.3e-22|58.0|69/69|d.50.1.2|1/1|dsRNA-binding domain-like| HM:SCP:REP 116->196|1fjgE1|7.7e-26|56.8|81/81|d.14.1.1|1/1|Ribosomal protein S5 domain 2-like| OP:NHOMO 978 OP:NHOMOORG 941 OP:PATTERN -----1--------------------------1-1----1----1--1--111--------------- 1111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111----11111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 ------1-----111------------------------------------------------------------------------------------------1-1------------------------------------------------------------------11112P322111143-21--1111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 152 STR:RPRED 69.7 SQ:SECSTR #################################################EEEEEEEEEEccccccccEEEEEEEEEEcccccEEEEEEEEccHHHHHHHHHHHHHHccccccccTTcccccEEEEETTEEEEEEEccTTcEEEccHHHHHHHHTTTccEEEEEEEEcccHHHHHHHHHHHHHHcccHHHHHHHHHcccccc################# DISOP:02AL 1-48, 207-218| PSIPRED cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccEEEEccEEEEEEEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHcEEEEEEEcccEEEEEEEEEEEEEEEEEEcccccEEEcccHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHccccHHHHHHHccccHHHHcccHHHHHHHHHHcccc //