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Nocardia farcinica IFM 10152 (nfar0)
Gene : rpsH
DDBJ      :rpsH         putative ribosomal protein S8
Swiss-Prot:RS8_NOCFA    RecName: Full=30S ribosomal protein S8;

Homologs  Archaea  15/68 : Bacteria  909/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
d.140.1
:132 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->131 1seiA PDBj 1e-39 57.8 %
:RPS:PDB   3->132 3bbnH PDBj 1e-47 38.5 %
:RPS:SCOP  2->132 1i6uA  d.140.1.1 * 1e-43 25.8 %
:HMM:SCOP  2->132 1i6uA_ d.140.1.1 * 4.3e-44 51.6 %
:RPS:PFM   5->131 PF00410 * Ribosomal_S8 7e-33 54.8 %
:HMM:PFM   5->132 PF00410 * Ribosomal_S8 8.2e-50 53.9 128/129  
:BLT:SWISS 1->132 RS8_NOCFA 5e-72 100.0 %
:PROS 102->119|PS00053|RIBOSOMAL_S8

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55633.1 GT:GENE rpsH GT:PRODUCT putative ribosomal protein S8 GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 855617..856015 GB:FROM 855617 GB:TO 856015 GB:DIRECTION + GB:GENE rpsH GB:PRODUCT putative ribosomal protein S8 GB:PROTEIN_ID BAD55633.1 LENGTH 132 SQ:AASEQ MTMTDPIADFLTRLRNANSAYHDQVKAPHSKLKANIAEILKREGYIADYRTEDAQVGKTLVVDLKYGPSRERSLAGVRRVSKPGLRVYAKSTNLPKVLGGLGVAIISTSQGLLTDKQAAKQGVGGEVLAYVW GT:EXON 1|1-132:0| SW:ID RS8_NOCFA SW:DE RecName: Full=30S ribosomal protein S8; SW:GN Name=rpsH; OrderedLocusNames=NFA_7880; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->132|RS8_NOCFA|5e-72|100.0|132/132| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| PROS 102->119|PS00053|RIBOSOMAL_S8|PDOC00052| BL:PDB:NREP 1 BL:PDB:REP 3->131|1seiA|1e-39|57.8|128/130| RP:PDB:NREP 1 RP:PDB:REP 3->132|3bbnH|1e-47|38.5|130/134| RP:PFM:NREP 1 RP:PFM:REP 5->131|PF00410|7e-33|54.8|126/127|Ribosomal_S8| HM:PFM:NREP 1 HM:PFM:REP 5->132|PF00410|8.2e-50|53.9|128/129|Ribosomal_S8| GO:PFM:NREP 4 GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00410|IPR000630| GO:PFM GO:0005622|"GO:intracellular"|PF00410|IPR000630| GO:PFM GO:0005840|"GO:ribosome"|PF00410|IPR000630| GO:PFM GO:0006412|"GO:translation"|PF00410|IPR000630| RP:SCP:NREP 1 RP:SCP:REP 2->132|1i6uA|1e-43|25.8|128/129|d.140.1.1| HM:SCP:REP 2->132|1i6uA_|4.3e-44|51.6|128/129|d.140.1.1|1/1|Ribosomal protein S8| OP:NHOMO 935 OP:NHOMOORG 931 OP:PATTERN 11-1-11--------------------1----1-1-------------------1-11111----1-- 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1------1-112--1------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 131 STR:RPRED 99.2 SQ:SECSTR #ccccHHHHHHHHHHHHHHTTccEEEEEccHHHHHHTHHHHTTTccccEEEEEccccEEEEEEcccccccccccccEEEcccTTcccEEcccccccGGGTTcEEEEEEcccEEcTTHHHHHTccEEEEEEEc DISOP:02AL 132-133| PSIPRED ccccHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHccccccEEEEEcccccEEEEEEEEcccccccEEcEEEEccccEEEEccHHHHHHHHccccEEEEEcccccccHHHHHHcccccEEEEEEc //