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Nocardia farcinica IFM 10152 (nfar0)
Gene : sdhA
DDBJ      :sdhA         putative succinate dehydrogenase flavoprotein subunit
Swiss-Prot:             

Homologs  Archaea  59/68 : Bacteria  798/915 : Eukaryota  186/199 : Viruses  0/175   --->[See Alignment]
a.7.3c.3.1d.168.1
:599 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   16->599 1nekA PDBj e-151 47.6 %
:RPS:PDB   5->43 2bc1A PDBj 8e-05 15.4 %
:RPS:PDB   18->599 2bs2A PDBj 3e-87 34.9 %
:RPS:SCOP  23->304 1e7pA2  c.3.1.4 * 2e-69 37.7 %
:RPS:SCOP  252->370 3cirM3  d.168.1.1 * 2e-12 46.8 %
:RPS:SCOP  462->599 1nekA1  a.7.3.1 * 3e-43 33.6 %
:HMM:SCOP  1->471 1jnrA2 c.3.1.4 * 2.2e-77 39.3 %
:HMM:SCOP  461->599 2bs2A1 a.7.3.1 * 6.3e-52 45.7 %
:RPS:PFM   23->416 PF00890 * FAD_binding_2 5e-92 54.6 %
:RPS:PFM   472->576 PF02910 * Succ_DH_flav_C 2e-26 50.5 %
:HMM:PFM   23->416 PF00890 * FAD_binding_2 3.9e-113 44.1 372/421  
:HMM:PFM   470->599 PF02910 * Succ_DH_flav_C 7e-48 54.3 127/129  
:BLT:SWISS 16->598 DHSA_SCHPO e-164 52.2 %
:PROS 56->65|PS00504|FRD_SDH_FAD_BINDING

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55792.1 GT:GENE sdhA GT:PRODUCT putative succinate dehydrogenase flavoprotein subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1048805..1050604) GB:FROM 1048805 GB:TO 1050604 GB:DIRECTION - GB:GENE sdhA GB:PRODUCT putative succinate dehydrogenase flavoprotein subunit GB:PROTEIN_ID BAD55792.1 LENGTH 599 SQ:AASEQ MSESSERNSGAVAARPVQEHRYDVVIVGAGGAGMRAAIEAGPRVRTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHDVQFFNEFYVLDLVLTETDRGPVATGVVAYELATGDLHVFHAKSIVFATGGSGRMYKTTSNAHTLTGDGMAIVFRKGLPLEDMEFHQFHPTGLAGLGILISEAVRGEGGILRNADGERFMERYAPTIKDLAPRDIVARSMVLEVLEGRGAGPNKDYVYIDVTHLGEDVLEEKLPDITEFSRTYLGVDPVKELVPVFPTCHYVMGGIPTRIRGEVLRNNDDIVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYAERTDFVEMPENPAQMVQDWLALILSDHGNERVADIRTELQRSMDNNASVFRTEDTLKQALTDIHALKERYSRITVQDKGKRYNSDLLEAVELGFLLELAEVTVVGALNRKESRGGHAREDYPDRDDVNFMRHTMAYKEGTDLLSDIRLDFKPVVQTRYEPMERKY GT:EXON 1|1-599:0| BL:SWS:NREP 1 BL:SWS:REP 16->598|DHSA_SCHPO|e-164|52.2|575/641| PROS 56->65|PS00504|FRD_SDH_FAD_BINDING|PDOC00393| BL:PDB:NREP 1 BL:PDB:REP 16->599|1nekA|e-151|47.6|578/588| RP:PDB:NREP 2 RP:PDB:REP 5->43|2bc1A|8e-05|15.4|39/473| RP:PDB:REP 18->599|2bs2A|3e-87|34.9|571/655| RP:PFM:NREP 2 RP:PFM:REP 23->416|PF00890|5e-92|54.6|368/375|FAD_binding_2| RP:PFM:REP 472->576|PF02910|2e-26|50.5|105/114|Succ_DH_flav_C| HM:PFM:NREP 2 HM:PFM:REP 23->416|PF00890|3.9e-113|44.1|372/421|FAD_binding_2| HM:PFM:REP 470->599|PF02910|7e-48|54.3|127/129|Succ_DH_flav_C| GO:PFM:NREP 4 GO:PFM GO:0009055|"GO:electron carrier activity"|PF00890|IPR003953| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00890|IPR003953| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF02910|IPR004112| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02910|IPR004112| RP:SCP:NREP 3 RP:SCP:REP 23->304|1e7pA2|2e-69|37.7|276/336|c.3.1.4| RP:SCP:REP 252->370|3cirM3|2e-12|46.8|62/64|d.168.1.1| RP:SCP:REP 462->599|1nekA1|3e-43|33.6|137/138|a.7.3.1| HM:SCP:REP 1->471|1jnrA2|2.2e-77|39.3|336/357|c.3.1.4|1/1|FAD/NAD(P)-binding domain| HM:SCP:REP 461->599|2bs2A1|6.3e-52|45.7|138/0|a.7.3.1|1/1|Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain| OP:NHOMO 2302 OP:NHOMOORG 1043 OP:PATTERN 11-1-12222122222-2112211322332121111111111111111-----111111111111-21 2322612111111234444-45223444444344554353233223222111332314--334233345321111222-11222222222222222---21311121233111-11111111111333333333332222211-412223222222222211122223233122122221112221222212222222222222222222222222222222122222221221111111111111112111112-1111-1111111-1-1111-111-----------------------------------11---111-253111111111-11113312212311-21123441231133----1-2-222222211111232342222222211111111112-32222323232122232222222224222122222312211111111222-23221121111121111111111111111111112222111113333333222224423222212322333322443222222222333232221332222222222223232222222422231323442222333334252221122221112111111134434113332222222345555265544647547551-12233------33442443333333333-333333333333233333344443332333333333333333332232222213333333333331122222222222222121111111111-211133333222222333233232232232222222222222233333333343333111111111122221131332222------------------------------------------1---222 11--112-944-11232213323242122222222223431333321111222211211222123221-2221113323413322321-14121172122232434-1112211122111-12-121224b1-3421111111---111111111221113125143411933211223*3332232741323343331 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 595 STR:RPRED 99.3 SQ:SECSTR ####ccccccHHHHccccEEEccEEEEcccHHHHHHHHHHHTTccEEEEccccGGGcGGGGccccEEccccccGGccHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHTTccccccccEEEEcccccccccccTTcccccEEccTTcHHHHHHHHHHHHHHHHTcEEEccEEEEEEEEETTEETcccEEEEEEETTTccEEEEEccEEEEcccccGGGcccccccTTcccHHHHHHHTTccccEEcTTcEEEEcccTTTcccccTHHHHHTcEEEcTTccccHHHHcTTTGGGccHHHHHHHHHHHHHTTTccccTTccEEEEcGGGcHHHHHHHcHHHHHHHHHTccccTTTccEEEccEEEEEccEEEccTTcccccTTccTccTEEEcGGGEEccccTTcccTTHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHTTcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccTTcccTTcccEETTTccEEEEEEcccTTcccccEEEEEEccGGGcccccccc DISOP:02AL 1-15| PSIPRED ccccccccccccccccHHHEEEEEEEEcccHHHHHHHHHHHHcccEEEEEccccccccccEEcccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHccccEEEccEEEEEEEEccccccEEEEEEEEEccccEEEEEEEccEEEEccccHHHcccccccccccHHHHHHHHHccccEEcccEEEEEEEEEcccccEEEccccccccEEEccccHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHccccccccEEEEcccEEEcccEEEcccEEEEccccccccccEEcHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccEEEcHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHcEEEEEEEccccccccEEEEEEccEEEEEccccccc //