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Nocardia farcinica IFM 10152 (nfar0)
Gene : sdhB
DDBJ      :sdhB         putative succinate dehydrogenase iron-sulfur subunit
Swiss-Prot:             

Homologs  Archaea  53/68 : Bacteria  648/915 : Eukaryota  187/199 : Viruses  0/175   --->[See Alignment]
a.1.2d.15.4
:257 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->254 1nekB PDBj 4e-48 43.9 %
:RPS:PDB   20->253 2bs2B PDBj 2e-34 27.5 %
:RPS:SCOP  22->128 1kf6B2  d.15.4.2 * 9e-14 37.6 %
:RPS:SCOP  132->254 1e7pB1  a.1.2.1 * 2e-31 22.8 %
:HMM:SCOP  21->128 1nekB2 d.15.4.2 * 2.6e-27 38.5 %
:HMM:SCOP  129->258 1nekB1 a.1.2.1 * 4e-36 34.6 %
:HMM:PFM   166->182 PF00037 * Fer4 0.00013 52.9 17/24  
:BLT:SWISS 23->254 DHSB_COXBU 9e-52 42.7 %
:PROS 170->181|PS00198|4FE4S_FER_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55791.1 GT:GENE sdhB GT:PRODUCT putative succinate dehydrogenase iron-sulfur subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1048032..1048805) GB:FROM 1048032 GB:TO 1048805 GB:DIRECTION - GB:GENE sdhB GB:PRODUCT putative succinate dehydrogenase iron-sulfur subunit GB:PROTEIN_ID BAD55791.1 LENGTH 257 SQ:AASEQ MTAVLEKTSASNPAPVPEGSTMITVKVARFNPEDGQGAHWESFQVPVLPTDRFLNVLIYIKSYLDGTLTFRRSCAHGVCGSDAMRINGVNRLACKVLMKDMLPKDGKSITVTVEPIRGLPVEKDLVVDMEPFFDAFRAVKPYLITSGNEPTRERIQSQADRARFDDTTKCILCACCTTSCPVYWHDGSYFGPAAIVNAHRFIFDSRDEGARERLDILNDVEGVWRCRTTFNCTDACPRGIEVTKAIQEVKRALLFAR GT:EXON 1|1-257:0| BL:SWS:NREP 1 BL:SWS:REP 23->254|DHSB_COXBU|9e-52|42.7|225/235| PROS 170->181|PS00198|4FE4S_FER_1|PDOC00176| BL:PDB:NREP 1 BL:PDB:REP 27->254|1nekB|4e-48|43.9|221/238| RP:PDB:NREP 1 RP:PDB:REP 20->253|2bs2B|2e-34|27.5|229/239| HM:PFM:NREP 1 HM:PFM:REP 166->182|PF00037|0.00013|52.9|17/24|Fer4| RP:SCP:NREP 2 RP:SCP:REP 22->128|1kf6B2|9e-14|37.6|101/105|d.15.4.2| RP:SCP:REP 132->254|1e7pB1|2e-31|22.8|123/133|a.1.2.1| HM:SCP:REP 21->128|1nekB2|2.6e-27|38.5|104/106|d.15.4.2|1/1|2Fe-2S ferredoxin-like| HM:SCP:REP 129->258|1nekB1|4e-36|34.6|130/0|a.1.2.1|1/1|alpha-helical ferredoxin| OP:NHOMO 1206 OP:NHOMOORG 888 OP:PATTERN 11-1-11111111111112122111111111111111111111---11-11-11-------1111-11 -2-131--------22233-321122333332222221431211121-1111111111--112122233211111111-112122222--1--------1---11---1-11111111111111111111211132--------111111111-1--------12111111-------1----11111---1111111111111111111111111111111111------1111111111111111111111---------------------------------------------------------------------------------------11---------2--1-11-12---2---------11111111111121111111111111111111111-11111212111111111111111111111122212211111111111111-11111121111111111111111111111111111111-111121221212222244122222-2121111111231111111111222121-1-211111111111211-11---11121222-----2--1-----11-31221122221111111111122323--221111111122333313222232222322--11121------22222212222222222-221222222222222222222222222222222222222222222222222212222222222221111111111111111111111111111111111111111111111111111111111111111111111112222222222222211111111111111--1---1111----------------------------------------------11- 11--111-522-11111111111111111111111111111111111111111111111111111111112111111-1111111111-111111121111-1212-11-1242211111112111131161-11211111111-11111111111211-2311112211211111111K1111112831361122121 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 235 STR:RPRED 91.4 SQ:SECSTR ###################ccEEEEEEEEccTTTTcccEEEEEEEEccTTccHHHHHHHHHHHTcTTcccccccccccccTTEEEETTEEEEGGGccGGGcTccTTTTcEEEEEccTTcEEEETTEEEcHHHHHHHHHHTTccccccccTcccccccHHHHHHHHHHHTcccccHHHHTcHHHHHcTTccHHHHHHHHHHHHTcTTccccHHHHHHHccTTTGGGcccccHHHHHcTTcccHHHHHHHHHHHHH### DISOP:02AL 1-22, 149-154| PSIPRED ccccccccccccccccccccEEEEEEEEEEccccccccEEEEEEEEccccccHHHHHHHHHHHcccccEEccccccccccccEEEEccEEcHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEcccccccccccccHHHHHHHHHHHHHHHcccccccccEEEcccccccHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccHHHcccccccHHHHHHHHHHHHHHcc //