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Nocardia farcinica IFM 10152 (nfar0)
Gene : secY
DDBJ      :secY         putative preprotein translocase subunit
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  908/915 : Eukaryota  17/199 : Viruses  0/175   --->[See Alignment]
f.41.1
:440 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->433 2zjsY PDBj 1e-87 45.3 %
:RPS:PDB   61->440 3dinC PDBj 7e-76 20.5 %
:RPS:SCOP  18->291 1rh5A  f.41.1.1 * 2e-28 24.9 %
:HMM:SCOP  1->431 1rh5A_ f.41.1.1 * 7.9e-119 48.8 %
:RPS:PFM   75->422 PF00344 * SecY 4e-68 54.1 %
:HMM:PFM   75->424 PF00344 * SecY 8.8e-115 48.9 331/341  
:BLT:SWISS 1->440 SECY_MYCLE e-177 70.9 %
:PROS 75->94|PS00755|SECY_1
:PROS 176->193|PS00756|SECY_2
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55639.1 GT:GENE secY GT:PRODUCT putative preprotein translocase subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 858448..859770 GB:FROM 858448 GB:TO 859770 GB:DIRECTION + GB:GENE secY GB:PRODUCT putative preprotein translocase subunit GB:PROTEIN_ID BAD55639.1 LENGTH 440 SQ:AASEQ MLSAFVSAFRTPDLRRKILFTLGLVALYRAGASLPSPGVDYKAVQECVDLVSGGENAGIYQLINLFSGGALLQLSVFAIGIMPYITASIIIQLLTVVIPRFEELRKEGQSGQTKMTQYTRYLSIALAILQATGLVALAARGQLLQGCQQDILADTSIFGMIIIVLVMTAGAALVMWFGEQITERGVGNGMSLLIFAGIAARIPTEGKAILDSRGGMVFALVCVAAFLIIVAVIFVEQGQRRIPVQYAKRVVGRKMYGGSSTYLPLKVNQAGVIPVIFASSLLYLPNLIAQLTGSQTATDPSWWQEIIQKYLVNPSNPIYIAIYFGLIVFFTYFYVAITFNPEERADEMKKFGGFIPGYRPGKPTADYLNFVLSRITLPGSIYLGLVAVLPNVFLDIGNSGGIQNLPFGGTAVLIMVSVGLDTVKQIESQLMNRNYEGFLK GT:EXON 1|1-440:0| BL:SWS:NREP 1 BL:SWS:REP 1->440|SECY_MYCLE|e-177|70.9|437/438| PROS 75->94|PS00755|SECY_1|PDOC00612| PROS 176->193|PS00756|SECY_2|PDOC00612| TM:NTM 9 TM:REGION 18->39| TM:REGION 70->92| TM:REGION 121->143| TM:REGION 155->177| TM:REGION 216->238| TM:REGION 267->289| TM:REGION 313->335| TM:REGION 372->394| TM:REGION 404->426| BL:PDB:NREP 1 BL:PDB:REP 1->433|2zjsY|1e-87|45.3|404/415| RP:PDB:NREP 1 RP:PDB:REP 61->440|3dinC|7e-76|20.5|361/396| RP:PFM:NREP 1 RP:PFM:REP 75->422|PF00344|4e-68|54.1|329/337|SecY| HM:PFM:NREP 1 HM:PFM:REP 75->424|PF00344|8.8e-115|48.9|331/341|SecY| GO:PFM:NREP 3 GO:PFM GO:0015031|"GO:protein transport"|PF00344|IPR002208| GO:PFM GO:0015450|"GO:P-P-bond-hydrolysis-driven protein transmembrane transporter activity"|PF00344|IPR002208| GO:PFM GO:0016020|"GO:membrane"|PF00344|IPR002208| RP:SCP:NREP 1 RP:SCP:REP 18->291|1rh5A|2e-28|24.9|229/410|f.41.1.1| HM:SCP:REP 1->431|1rh5A_|7.9e-119|48.8|385/422|f.41.1.1|1/1|Preprotein translocase SecY subunit| OP:NHOMO 1000 OP:NHOMOORG 928 OP:PATTERN ---------------------------------1-----------1------------------1--- 1111211111111111111-111111111111111111111111111111111211111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111122222122222322211111122211111111111111111111111111111112211111111111111111111121111112221111111211212221211111111111111212111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11222L222111234-23------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 439 STR:RPRED 99.8 SQ:SECSTR ccHHHHHHHccHHHHHHHHHHHHHHHHHHHHTTccccccccHHHHHHHHccGGG#cccTTcTTHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHTTTTcTTHHHHHHHHHHHHHcTTccccccccccTHHHHHHHHHHHHHHHHHTTTcccccccccccTTTccccccccccccccccccccccccHHHHHHHHHHHHHHHTTccTTcccccccccccccTTTTHcTTHHHHHHHHHHHHHHHHHHHHTcTTHHHHHTTccccccccccccccTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTccHcccccccTTHHHHHHHHHHHHHHHHHHHHHcccccccTTcc DISOP:02AL 102-115, 248-261| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEcccccEEEEEHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHEEEEccccccccccccHHHHHcccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc //