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Nocardia farcinica IFM 10152 (nfar0)
Gene : serS
DDBJ      :serS         putative seryl-tRNA synthase
Swiss-Prot:SYS_NOCFA    RecName: Full=Seryl-tRNA synthetase;         EC=6.1.1.11;AltName: Full=Seryl-tRNA(Ser/Sec) synthetase;AltName: Full=Serine--tRNA ligase;         Short=SerRS;

Homologs  Archaea  55/68 : Bacteria  910/915 : Eukaryota  196/199 : Viruses  0/175   --->[See Alignment]
a.2.7d.104.1
:420 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->418 2dq2A PDBj 7e-76 42.3 %
:RPS:PDB   1->419 2dq0A PDBj 1e-84 39.1 %
:RPS:SCOP  113->418 1serA2  d.104.1.1 * 6e-51 42.3 %
:HMM:SCOP  1->111 1setA1 a.2.7.1 * 3.9e-29 35.5 %
:HMM:SCOP  112->420 1setA2 d.104.1.1 * 1.8e-89 40.6 %
:RPS:PFM   1->82 PF02403 * Seryl_tRNA_N 2e-08 34.1 %
:RPS:PFM   183->335 PF00587 * tRNA-synt_2b 6e-13 30.2 %
:HMM:PFM   174->339 PF00587 * tRNA-synt_2b 1.2e-32 25.3 162/173  
:HMM:PFM   1->106 PF02403 * Seryl_tRNA_N 2e-28 38.7 106/108  
:BLT:SWISS 1->420 SYS_NOCFA 0.0 100.0 %
:PROS 172->190|PS00595|AA_TRANSFER_CLASS_5
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54982.1 GT:GENE serS GT:PRODUCT putative seryl-tRNA synthase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 127645..128907 GB:FROM 127645 GB:TO 128907 GB:DIRECTION + GB:GENE serS GB:PRODUCT putative seryl-tRNA synthase GB:PROTEIN_ID BAD54982.1 LENGTH 420 SQ:AASEQ MIDLRLLREDPDAVRASQRARGEDPALVDALLEADAARRAAVATADNLRAEQKAMSKQIGKAPKEERSALLARAQELSVKVKEAEAAQHAADADLDAAHRALSNVVLPAVPAGGEDDYVVLETVGTPPEFDFEPKDHLELGEALGLMDMERGAKVSGSRFYFLTGHGALLQLGLLQLAAQKAVANGFTMMIPPVLVRPEVMAGTGFLGRHAAEVYHLADDDMYLVGTSEVPLAGYHADEILDLSAGPKRYAGWSSCFRREAGSYGKDTRGIIRVHQFDKVEMFVYTTPDQAEAEHERLLAWEREMLAAIEVPYRIIDVAAGDLGSSAARKFDCEAWVPSQQTYRELTSTSNCTTFQARRLSVRYRDENGKPQIAATLNGTLATTRWIVAILENHQRADGSVRVPAALVPFVGTDVLRPPA GT:EXON 1|1-420:0| SW:ID SYS_NOCFA SW:DE RecName: Full=Seryl-tRNA synthetase; EC=6.1.1.11;AltName: Full=Seryl-tRNA(Ser/Sec) synthetase;AltName: Full=Serine--tRNA ligase; Short=SerRS; SW:GN Name=serS; OrderedLocusNames=NFA_1400; SW:KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm;Ligase; Nucleotide-binding; Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->420|SYS_NOCFA|0.0|100.0|420/420| GO:SWS:NREP 6 GO:SWS GO:0004812|"GO:aminoacyl-tRNA ligase activity"|Aminoacyl-tRNA synthetase| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| PROS 172->190|PS00595|AA_TRANSFER_CLASS_5|PDOC00514| COIL:NAA 36 COIL:NSEG 1 COIL:REGION 65->100| SEG 26->46|alvdalleadaarraavatad| SEG 83->102|eaeaaqhaadadldaahral| SEG 163->180|ltghgallqlgllqlaaq| BL:PDB:NREP 1 BL:PDB:REP 1->418|2dq2A|7e-76|42.3|418/448| RP:PDB:NREP 1 RP:PDB:REP 1->419|2dq0A|1e-84|39.1|419/447| RP:PFM:NREP 2 RP:PFM:REP 1->82|PF02403|2e-08|34.1|82/107|Seryl_tRNA_N| RP:PFM:REP 183->335|PF00587|6e-13|30.2|149/170|tRNA-synt_2b| HM:PFM:NREP 2 HM:PFM:REP 174->339|PF00587|1.2e-32|25.3|162/173|tRNA-synt_2b| HM:PFM:REP 1->106|PF02403|2e-28|38.7|106/108|Seryl_tRNA_N| GO:PFM:NREP 12 GO:PFM GO:0000166|"GO:nucleotide binding"|PF02403|IPR015866| GO:PFM GO:0004828|"GO:serine-tRNA ligase activity"|PF02403|IPR015866| GO:PFM GO:0005524|"GO:ATP binding"|PF02403|IPR015866| GO:PFM GO:0005737|"GO:cytoplasm"|PF02403|IPR015866| GO:PFM GO:0006412|"GO:translation"|PF02403|IPR015866| GO:PFM GO:0006434|"GO:seryl-tRNA aminoacylation"|PF02403|IPR015866| GO:PFM GO:0000166|"GO:nucleotide binding"|PF00587|IPR002314| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF00587|IPR002314| GO:PFM GO:0005524|"GO:ATP binding"|PF00587|IPR002314| GO:PFM GO:0005737|"GO:cytoplasm"|PF00587|IPR002314| GO:PFM GO:0006412|"GO:translation"|PF00587|IPR002314| GO:PFM GO:0006418|"GO:tRNA aminoacylation for protein translation"|PF00587|IPR002314| RP:SCP:NREP 1 RP:SCP:REP 113->418|1serA2|6e-51|42.3|305/311|d.104.1.1| HM:SCP:REP 1->111|1setA1|3.9e-29|35.5|110/110|a.2.7.1|1/1|tRNA-binding arm| HM:SCP:REP 112->420|1setA2|1.8e-89|40.6|308/0|d.104.1.1|1/1|Class II aaRS and biotin synthetases| OP:NHOMO 1447 OP:NHOMOORG 1161 OP:PATTERN 1111111111111111111111111111111111---------1-111--111-11111111111111 1111111111111111111-11111111111111111111111211111111111111111111111211111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111221111111211111111111111211111111111111111111211111111112211111111111111111111111111111111111111111111111111111111111121222222212112111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111-11111111111111111111111111111111 2111222141112222222222222222222222222222222221322223232222222222222212222222222122222222-2422222222222233412226322431212212244-225M2-3351122322311221122132111322423221221122122222N2222243742422242222 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 420 STR:RPRED 100.0 SQ:SECSTR cccHHHHHHcHHHHHHHHHHHTGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccccTTcccccGGGcEEEEEEccEEEEccccccHHHHHHHTTcEEcHHHHHHTcTTccEEcHHHHHHHHHHHHHHHHHHHHTTcEEEccccEEcHHHHHTTccTTHHHHTccccTTcccEEcccTHHHHHHTTTTEEEETTTccEEEEEEEEEEcccTTcccccccccccccEEEEEEEEEEEcTTTHHHHHHHHHHHHHHHHHHTTccEEEEEccGGGccccccEEEEEEEEETTTTEEEEEEEEEEcTTTTHHHHTEEEEcTTcccEEcEEEEEEEEHHHHHHHHHHHcccTTccEEccGGGHHHHcccEEcccc DISOP:02AL 51-72| PSIPRED cccHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEccccccccccccHHHHHHHccccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHcccEEEEcccEEcHHHHHHcccccccccccEEEccccEEEEcccHHHHHHHHHcccccHHHccEEEEEEEEEEEEccccccccccccccHHEEccEEEEEEccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccEEEcHHHHHHHHHHHHHHHHccccHHHccccccEEEEcccccEEEEEEEEccHHHHHHHHHHHHHHcccccEEEccHHHcccccccEEcccc //