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Nocardia farcinica IFM 10152 (nfar0)
Gene : sodF
DDBJ      :sodF         putative superoxide dismutase
Swiss-Prot:SODM_NOCAS   RecName: Full=Superoxide dismutase [Mn];         EC=1.15.1.1;

Homologs  Archaea  39/68 : Bacteria  779/915 : Eukaryota  191/199 : Viruses  0/175   --->[See Alignment]
a.2.11d.352.1d.44.1
:206 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->199 1gn3A PDBj 6e-94 78.8 %
:RPS:PDB   4->199 2a03A PDBj 3e-70 33.8 %
:RPS:SCOP  6->110 2hc5A1  d.352.1.1 * 5e-30 15.8 %
:RPS:SCOP  86->197 1ap5A2  d.44.1.1 * 6e-30 49.1 %
:HMM:SCOP  2->87 1bsmA1 a.2.11.1 * 3e-32 50.0 %
:HMM:SCOP  86->198 1ma1A2 d.44.1.1 * 1.6e-41 53.1 %
:RPS:PFM   4->84 PF00081 * Sod_Fe_N 6e-15 48.1 %
:RPS:PFM   90->193 PF02777 * Sod_Fe_C 2e-28 56.3 %
:HMM:PFM   90->194 PF02777 * Sod_Fe_C 1.3e-44 51.4 105/106  
:HMM:PFM   3->84 PF00081 * Sod_Fe_N 1.1e-33 54.9 82/82  
:BLT:SWISS 1->206 SODM_NOCAS e-120 97.1 %
:PROS 160->167|PS00088|SOD_MN

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54963.1 GT:GENE sodF GT:PRODUCT putative superoxide dismutase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(111687..112307) GB:FROM 111687 GB:TO 112307 GB:DIRECTION - GB:GENE sodF GB:PRODUCT putative superoxide dismutase GB:PROTEIN_ID BAD54963.1 LENGTH 206 SQ:AASEQ MAEYTLPDLDYDYSALEPHISGQINELHHSKHHAAYVAGANQALEKLEAARESGDHSAIFLYEKNLAFHLGGHVNHSIWWKNLSPNGGDKPVGELAAAIDDQFGSFDKFRAQFTAAANGLQGSGWAVLGYDTLGQKLLTFQLYDQQANVPLGIIPLLQVDMWEHAFYLQYKNVKADYVTAFWNVVNWADVQDRFARAVNQGKGLVF GT:EXON 1|1-206:0| SW:ID SODM_NOCAS SW:DE RecName: Full=Superoxide dismutase [Mn]; EC=1.15.1.1; SW:GN Name=sodA; Synonyms=sod; SW:KW Manganese; Metal-binding; Oxidoreductase. SW:EXACT F SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->206|SODM_NOCAS|e-120|97.1|206/207| GO:SWS:NREP 3 GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0016491|"GO:oxidoreductase activity"|Oxidoreductase| GO:SWS GO:0055114|"GO:oxidation reduction"|Oxidoreductase| PROS 160->167|PS00088|SOD_MN|PDOC00083| BL:PDB:NREP 1 BL:PDB:REP 2->199|1gn3A|6e-94|78.8|198/198| RP:PDB:NREP 1 RP:PDB:REP 4->199|2a03A|3e-70|33.8|195/197| RP:PFM:NREP 2 RP:PFM:REP 4->84|PF00081|6e-15|48.1|81/82|Sod_Fe_N| RP:PFM:REP 90->193|PF02777|2e-28|56.3|103/104|Sod_Fe_C| HM:PFM:NREP 2 HM:PFM:REP 90->194|PF02777|1.3e-44|51.4|105/106|Sod_Fe_C| HM:PFM:REP 3->84|PF00081|1.1e-33|54.9|82/82|Sod_Fe_N| GO:PFM:NREP 8 GO:PFM GO:0004784|"GO:superoxide dismutase activity"|PF00081|IPR019831| GO:PFM GO:0006801|"GO:superoxide metabolic process"|PF00081|IPR019831| GO:PFM GO:0046872|"GO:metal ion binding"|PF00081|IPR019831| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00081|IPR019831| GO:PFM GO:0004784|"GO:superoxide dismutase activity"|PF02777|IPR019832| GO:PFM GO:0006801|"GO:superoxide metabolic process"|PF02777|IPR019832| GO:PFM GO:0046872|"GO:metal ion binding"|PF02777|IPR019832| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02777|IPR019832| RP:SCP:NREP 2 RP:SCP:REP 6->110|2hc5A1|5e-30|15.8|101/109|d.352.1.1| RP:SCP:REP 86->197|1ap5A2|6e-30|49.1|112/115|d.44.1.1| HM:SCP:REP 2->87|1bsmA1|3e-32|50.0|86/86|a.2.11.1|1/1|Fe,Mn superoxide dismutase (SOD), N-terminal domain| HM:SCP:REP 86->198|1ma1A2|1.6e-41|53.1|113/113|d.44.1.1|1/1|Fe,Mn superoxide dismutase (SOD), C-terminal domain| OP:NHOMO 1506 OP:NHOMOORG 1009 OP:PATTERN 11----1111111111-111111-12221221--1--------2--111-111--------111--12 111--11111111121111-1-1112111111-1111211-111112-111111111111---11121211-----------111-111111-1111--1122113121211111111111111111111111121111111112121222221111----1111222231------------11111---122333333333333333322222333222111111111131122222222222222111111---11-----------1-----11111111111111111111111111111111111111111111111-1-12222222222211222111111--2--1122-211-1-1--1---1211122111111213111121212211111111112-112114111111133111111111211211111111111111111111111112111111111111111111111111111111-11221122221111111111111111111111521112-111111211212121111211121-1111111111112---1-31-1-111-111-111--111112121111111111111111111112---112211111211111111111211111111111-1111111-11121111212222222222-222222222222222222222211212222222222222222222222222112222222222221111111111111211211111111111111111111113111122222222212222122211111111111112222222222233232333332222---111----11111111--11112-----------------------1-------121 2211121-B44-8B22222222222122222221111111111222112222223322222221211111112121111112221112-3522223111111221211232131112111-131111115A3-3141-1111211111--2111111121112311111331233367171116633862732342212 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 206 STR:RPRED 100.0 SQ:SECSTR ccccccccccccTTTTTTTccHHHHHHHHHTHHHHHHHHHHHHHTTcTTTTccHHHHHHHHccHHHHHHHHHHHHHHHHHHTccTTccccccTHHHHHHHHHHccHHHHHHHHHHHHHHccccEEEEEEEcTTccEEEEEEETTccTTTTTccEEEEEEEccGGGTHHHHTTcHHHHHHHHTTTccHHHHHHHHHHHHccHHHHTT DISOP:02AL 86-92, 205-206| PSIPRED cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEcccccccccccEEEEEEEHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccc //