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Nocardia farcinica IFM 10152 (nfar0)
Gene : tlyA
DDBJ      :tlyA         putative cytotoxin/hemolysin
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  508/915 : Eukaryota  14/199 : Viruses  0/175   --->[See Alignment]
c.66.1d.66.1
:273 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->270 3hp7A PDBj 2e-35 39.4 %
:RPS:PDB   6->70 1c05A PDBj 2e-08 32.3 %
:RPS:PDB   62->163 3douA PDBj 3e-06 24.2 %
:RPS:SCOP  6->74 1jh3A  d.66.1.4 * 3e-09 17.9 %
:RPS:SCOP  63->161 1eizA  c.66.1.2 * 3e-06 23.9 %
:HMM:SCOP  6->107 1c06A_ d.66.1.2 * 3.5e-20 37.4 %
:HMM:SCOP  62->252 1ej0A_ c.66.1.2 * 8.2e-24 29.4 %
:RPS:PFM   6->49 PF01479 * S4 3e-05 47.7 %
:RPS:PFM   65->171 PF01728 * FtsJ 2e-09 49.0 %
:HMM:PFM   64->247 PF01728 * FtsJ 1e-20 32.9 155/181  
:HMM:PFM   6->49 PF01479 * S4 2.3e-11 45.5 44/48  
:BLT:SWISS 2->270 YQXC_BACSU 2e-40 38.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56842.1 GT:GENE tlyA GT:PRODUCT putative cytotoxin/hemolysin GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2172201..2173022 GB:FROM 2172201 GB:TO 2173022 GB:DIRECTION + GB:GENE tlyA GB:PRODUCT putative cytotoxin/hemolysin GB:PROTEIN_ID BAD56842.1 LENGTH 273 SQ:AASEQ MARRARVDAELVRRGLARSREHAVELIGAGRVLIAGTVASKPATAVEPGTPLVVREQPDEVQWASRGAHKLLGALERFERAGLRVAGKRCLDAGASTGGFTDVLLSREAREVVAVDVGYGQLVWRLRTDERVRVFDRTNVRTLTPELIEGAVELVVGDLSFISLGLVLPALASCCAEGADLLPMVKPQFEVGKERVGSGGVVRDPALRAEAVCGVAAAAAEHGLRTVGAVASPLPGPSGNVEYFLWLRKDGPFEYDAAQVRELVARAVEEGPR GT:EXON 1|1-273:0| BL:SWS:NREP 1 BL:SWS:REP 2->270|YQXC_BACSU|2e-40|38.3|264/281| SEG 206->225|alraeavcgvaaaaaehglr| BL:PDB:NREP 1 BL:PDB:REP 2->270|3hp7A|2e-35|39.4|259/270| RP:PDB:NREP 2 RP:PDB:REP 6->70|1c05A|2e-08|32.3|65/159| RP:PDB:REP 62->163|3douA|3e-06|24.2|99/170| RP:PFM:NREP 2 RP:PFM:REP 6->49|PF01479|3e-05|47.7|44/46|S4| RP:PFM:REP 65->171|PF01728|2e-09|49.0|102/179|FtsJ| HM:PFM:NREP 2 HM:PFM:REP 64->247|PF01728|1e-20|32.9|155/181|FtsJ| HM:PFM:REP 6->49|PF01479|2.3e-11|45.5|44/48|S4| GO:PFM:NREP 4 GO:PFM GO:0003723|"GO:RNA binding"|PF01479|IPR002942| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01728|IPR002877| GO:PFM GO:0008168|"GO:methyltransferase activity"|PF01728|IPR002877| GO:PFM GO:0032259|"GO:methylation"|PF01728|IPR002877| RP:SCP:NREP 2 RP:SCP:REP 6->74|1jh3A|3e-09|17.9|67/99|d.66.1.4| RP:SCP:REP 63->161|1eizA|3e-06|23.9|92/181|c.66.1.2| HM:SCP:REP 6->107|1c06A_|3.5e-20|37.4|99/159|d.66.1.2|1/1|Alpha-L RNA-binding motif| HM:SCP:REP 62->252|1ej0A_|8.2e-24|29.4|170/0|c.66.1.2|1/1|S-adenosyl-L-methionine-dependent methyltransferases| OP:NHOMO 532 OP:NHOMOORG 523 OP:PATTERN ------------------------------------------------1------------------- 1111111111111111111-11111111111111111111111111111111111111--1111111111111111111112111111------------------------------------------------11111---111111111111111111111111111111111111111---111111111111111111111111111111111111111111111111-------------------111111111-111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111-11-1-111111111111111111111111111111111-11111111111-11111111111111111----------1111111111111111------------1111111111111-----11111--------------------------------------11111111111-------11-----------11111111111111111111111111111111111111111111111111111111111-------1---------------------------------------------------------------------------------------------------------------------------------------111------------------------------------------------------------------------------------1111111111111111--1----1--111---111111-1-11111-1111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11171111111-1-12------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 269 STR:RPRED 98.5 SQ:SECSTR #cccccHHHHHHHTTccccHHHHHHHHHTTcEEETTEEcccccccccTTcEEEEcGGGcccHHHHHHHHTHHHHHHHHccccHHHTTcEEEEEccTTcHHHHHHTTTccEEEEEEccccccTTcEEEEccTTcccHHHHHHHHHHHHTcccEEEEEEccccccHHHHHHHHHHHEEEEEEEEEEEGGGHHHHHHHHHHTTcEEEEHHHHHHHHHHHHHHHHTTEEEEEEEEcccccGGGcccEEEEEEEcccccccGGGHHHHHHHHHHH### DISOP:02AL 1-2, 268-273| PSIPRED cccHHHHHHHHHHcccccHHHHHHHHHHcccEEEccEEEcccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccHHHHHHHHccccEEEEEEccccHHHHHHHccccEEEEEccccccccHHHccccccEEEEEcHHHHHHHHHHHHHHHHccccEEEEEEcccEEccHHHcccccccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHccc //