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Nocardia farcinica IFM 10152 (nfar0)
Gene : trpA
DDBJ      :trpA         putative tryptophan synthase alpha subunit
Swiss-Prot:TRPA_NOCFA   RecName: Full=Tryptophan synthase alpha chain;         EC=4.2.1.20;

Homologs  Archaea  36/68 : Bacteria  738/915 : Eukaryota  118/199 : Viruses  0/175   --->[See Alignment]
c.1.2
:266 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->260 2ekcA PDBj 3e-41 38.5 %
:RPS:PDB   5->261 2cliA PDBj 1e-27 27.1 %
:RPS:SCOP  19->260 1geqA  c.1.2.4 * 7e-34 29.9 %
:HMM:SCOP  4->267 1xcfA_ c.1.2.4 * 4.5e-78 43.2 %
:RPS:PFM   11->255 PF00290 * Trp_syntA 3e-49 49.4 %
:HMM:PFM   11->258 PF00290 * Trp_syntA 1.5e-71 38.3 248/259  
:BLT:SWISS 1->266 TRPA_NOCFA e-147 100.0 %
:PROS 51->64|PS00167|TRP_SYNTHASE_ALPHA

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56708.1 GT:GENE trpA GT:PRODUCT putative tryptophan synthase alpha subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2032897..2033697 GB:FROM 2032897 GB:TO 2033697 GB:DIRECTION + GB:GENE trpA GB:PRODUCT putative tryptophan synthase alpha subunit GB:PROTEIN_ID BAD56708.1 LENGTH 266 SQ:AASEQ MSQQSRLANTFATARAEHRAALIGYLPAGYPDLAGSIATCRAMVESGCDIVEVGVAYSDPVMDGPTIQAAAEQALRGGVRVRDVFSVVEAITAAGGQAVVMSYWNPVLRYGVERFARDLAAAGGAGIITPNLIPEEADDWFIASATHNLDRIFLVAPSSTEERLVKTLEASRGFIYAASTMGVTGARDAVSSAAPALCARIRAHSDIPIGVGLGVRNGAQAAEIASYADGVIVGSALVSAAGEGLDAVRALTSELAEGVRSATVAS GT:EXON 1|1-266:0| SW:ID TRPA_NOCFA SW:DE RecName: Full=Tryptophan synthase alpha chain; EC=4.2.1.20; SW:GN Name=trpA; OrderedLocusNames=NFA_18620; SW:KW Amino-acid biosynthesis; Aromatic amino acid biosynthesis;Complete proteome; Lyase; Tryptophan biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->266|TRPA_NOCFA|e-147|100.0|266/266| GO:SWS:NREP 4 GO:SWS GO:0008652|"GO:cellular amino acid biosynthetic process"|Amino-acid biosynthesis| GO:SWS GO:0009073|"GO:aromatic amino acid family biosynthetic process"|Aromatic amino acid biosynthesis| GO:SWS GO:0016829|"GO:lyase activity"|Lyase| GO:SWS GO:0000162|"GO:tryptophan biosynthetic process"|Tryptophan biosynthesis| PROS 51->64|PS00167|TRP_SYNTHASE_ALPHA|PDOC00151| BL:PDB:NREP 1 BL:PDB:REP 6->260|2ekcA|3e-41|38.5|247/253| RP:PDB:NREP 1 RP:PDB:REP 5->261|2cliA|1e-27|27.1|247/258| RP:PFM:NREP 1 RP:PFM:REP 11->255|PF00290|3e-49|49.4|245/255|Trp_syntA| HM:PFM:NREP 1 HM:PFM:REP 11->258|PF00290|1.5e-71|38.3|248/259|Trp_syntA| GO:PFM:NREP 2 GO:PFM GO:0004834|"GO:tryptophan synthase activity"|PF00290|IPR002028| GO:PFM GO:0006568|"GO:tryptophan metabolic process"|PF00290|IPR002028| RP:SCP:NREP 1 RP:SCP:REP 19->260|1geqA|7e-34|29.9|234/241|c.1.2.4| HM:SCP:REP 4->267|1xcfA_|4.5e-78|43.2|264/0|c.1.2.4|1/1|Ribulose-phoshate binding barrel| OP:NHOMO 935 OP:NHOMOORG 892 OP:PATTERN -----------------------111111111111111111111111111111111--1-------11 1111111111111111111-11111111111111111111121111111111111111--111111111111111111----111111111111---111-111111111-1111-1-11-----11111111111111111111111211112111111111111112211111111111111111111-11111111111-111111111111111111111111111111-1111111111111111111----11-----11--11----1-111-------21111111111111-------------1--111----11-11----------1-11----1-1--11111111111--1111111-11111111-----111111111111111111111111-11111111111-1111111111111111111111111111111111111111111-----------------------------111111111111111111111111111111-1111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111---111111-11111111111111111111-1111111111111111111111111111111111111111111111111111-11111111111111-1111-1111111212111111-11111-111111111111111111111111111111111111111111111111111111111111111111111111-111111--------------------------------------1--1-111111 ------1-----11111111122343311111111112111111-11111111111111211111111-1111111111111111111-11111111111-21112-11-------------------------------------------------1--------------1-11118111111442122112111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 266 STR:RPRED 100.0 SQ:SECSTR EEccHHHHHHHHHHHHTTccEEEEEEETTcccHHHHHHHHHHHHHHTcccEEEEccccccTTccHHHHHHHHHHHHTTccHHHHHHHHHHHHHHccccEEEEcHHHHHTTcHHHHHHHHHHHTccEEEETTccGGGcHHHHHHHHHTTcEEccEEcTTccHHHHHHHHHHccccEEEEccccccccHcccccccHHHHHHHHHTTcccEEEEcccccHHHHHHHHTTccEEEEcHHHHTcHHHHHHHHHHHHHHHHHTTccHcGGc DISOP:02AL 1-4, 264-266| PSIPRED cccccHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHcccEEEEEEccccccccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHccEEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcc //