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Nocardia farcinica IFM 10152 (nfar0)
Gene : trpB
DDBJ      :trpB         putative tryptophan synthase beta subunit
Swiss-Prot:             

Homologs  Archaea  65/68 : Bacteria  754/915 : Eukaryota  123/199 : Viruses  0/175   --->[See Alignment]
c.79.1
:424 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   28->411 1v8zB PDBj e-127 56.8 %
:RPS:PDB   26->405 1a5sB PDBj 8e-95 53.8 %
:RPS:SCOP  26->408 1a50B  c.79.1.1 * 1e-94 53.4 %
:HMM:SCOP  21->410 1qopB_ c.79.1.1 * 1.4e-158 54.2 %
:RPS:PFM   75->375 PF00291 * PALP 2e-20 40.5 %
:HMM:PFM   73->397 PF00291 * PALP 2.8e-47 34.3 277/297  
:BLT:SWISS 6->412 TRPB_MYCTU e-179 75.2 %
:PROS 100->114|PS00168|TRP_SYNTHASE_BETA
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56707.1 GT:GENE trpB GT:PRODUCT putative tryptophan synthase beta subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2031626..2032900 GB:FROM 2031626 GB:TO 2032900 GB:DIRECTION + GB:GENE trpB GB:PRODUCT putative tryptophan synthase beta subunit GB:PROTEIN_ID BAD56707.1 LENGTH 424 SQ:AASEQ MMRVSELPKASAGVAQPSPHEPDLGGHFGVYGGRHVPEALMAVIEEVTAEYEKCRADHTFLDELDRLQRDYTGRPSPVFECTRLAEHAGGARILLKREDLNHTGSHKINNVLGQALLAKRMGKTRVIAETGAGQHGVATATACALLGLECVIYMGAVDTARQALNVARMRLLGAEVVSVTTGSQTLKDAINEALRDWVTNADRTYYCFGTAAGPHPFPLMVRDFQRIVGLEARAQVRDLTGRLPDAVVACVGGGSNAIGIFHPFIDDAGVRLIGYEAAGDGVDTGRHAATFAGGSPGAFQGAYSYLLQDEDGQTIESHSISAGLDYPGVGPEHAYLKDIGRAEYQPITDTEAMDALLLLSRSEGIIPAIESAHAVAGALKLGKELGEGAIILVNLSGRGDKDMDTAARWFGLFDEPAADKENQQ GT:EXON 1|1-424:0| BL:SWS:NREP 1 BL:SWS:REP 6->412|TRPB_MYCTU|e-179|75.2|407/422| PROS 100->114|PS00168|TRP_SYNTHASE_BETA|PDOC00152| SEG 376->389|agalklgkelgega| BL:PDB:NREP 1 BL:PDB:REP 28->411|1v8zB|e-127|56.8|384/387| RP:PDB:NREP 1 RP:PDB:REP 26->405|1a5sB|8e-95|53.8|379/387| RP:PFM:NREP 1 RP:PFM:REP 75->375|PF00291|2e-20|40.5|259/293|PALP| HM:PFM:NREP 1 HM:PFM:REP 73->397|PF00291|2.8e-47|34.3|277/297|PALP| GO:PFM:NREP 3 GO:PFM GO:0003824|"GO:catalytic activity"|PF00291|IPR001926| GO:PFM GO:0008152|"GO:metabolic process"|PF00291|IPR001926| GO:PFM GO:0030170|"GO:pyridoxal phosphate binding"|PF00291|IPR001926| RP:SCP:NREP 1 RP:SCP:REP 26->408|1a50B|1e-94|53.4|382/390|c.79.1.1| HM:SCP:REP 21->410|1qopB_|1.4e-158|54.2|389/390|c.79.1.1|1/1|Tryptophan synthase beta subunit-like PLP-dependent enzymes| OP:NHOMO 1220 OP:NHOMOORG 942 OP:PATTERN 22111-112222222212212122111212122121111111122122222221221121-2111-11 1121212211111111111-12111211111122221222121111111111121111--212211111111111111--11221211222212---111-111111111-11-111-21-----22222222222222222221211211111111111111111112211111111111111111122111111111111-111111111111111221111111111112-1111111111111111111----11-----11--11----1-111-------21111111111111-------------2--111----23-11-------1-121221---2-2--11122222222212122221111211111-----111111112222211111111111-11111111111-1111111111111111111122221111111111111111212-----------------------------111111111111111111111111111111-1111111111111111222112121122111121111111111212-2122222222222121222242222221122211111111111111111112221211111121211111111111111111111122---122211---111111111111111111-1111111111111112111111111111111111111111111111111111-11111112111111-1111-1111111212111111-11111-1122222211221111111111111112111111111111211111111112111111111111111111121111111----------1-------------------------2112121212122 --11--1-----11111112243454311111111111111111111111221211111211111111-1111211111111111111-12111111111-21112-111-----------------------------------------------------2---------2-1111Q1112151771322131111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 413 STR:RPRED 97.4 SQ:SECSTR ###########cTTTccccccTTcccEETTEEEEEccGGGHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHTTcccccEEEcccTTTTcccEEEEEEEGGGcTTccTHHHHHHHHHHHHHHHTccEEEEEEcccHHHHHHHHHHHHHTcEEEEEEEHHHHHHcHHHHHHHHHTTcEEEEEccTTccHHHHHHHHHHHHHHHTTTEEEccccccccTTHHHHHHHTTTHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHGGGTTcTTcEEEEEEEEETcGGGcccccHHHHcEEEEETEEEEEEcccTTccccccccccGGGccccccHHHHHHHHTTcEEEEEEEHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcTTccEEEEEEEccccGGGTTGHHHHHHHTccTcccTTccc DISOP:02AL 1-2, 417-424| PSIPRED ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccEEHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHcccccEEEcccHHHcccccccccccccEEEccccccccHHHHHHHHHHccEEEEEEcHHHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHccccccHHHHccccc //